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Report for CCDS50488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50488.1 Public Mus musculus 2 Frmd4a 23 108 98 CCDS HistoryNCBI Gene:209630Re-query CCDS DB by CCDS ID:50488.1Re-query CCDS DB by GeneID:209630See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075767.13 ENSMUSP00000075172.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075767.13Link to Ensembl Protein Viewer:ENSMUSP00000075172.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000075767Re-query CCDS DB by Protein ID:ENSMUSP00000075172
Original member Current member NCBI NM_001177843.1 NP_001171314.1 Accepted alive Link to Nucleotide Sequence:NM_001177843.1Link to Protein Sequence:NP_001171314.1Re-query CCDS DB by Nucleotide ID:NM_001177843Re-query CCDS DB by Protein ID:NP_001171314Link to BLAST:NP_001171314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171314.1 1020 Q8BIE6-1 1020 100% 0 0

Chromosomal Locations for CCDS 50488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4431199 4431264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4473121 4473215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4484040 4484132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4497989 4498073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4513789 4513845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4514997 4515019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4529792 4529875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4534546 4534611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4535173 4535230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4537239 4537325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4560214 4560290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4566052 4566190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4572298 4572439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4586361 4586494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4590620 4590742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4594539 4594767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4597338 4597394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4601115 4601355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4602115 4602279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4603377 4604251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4605970 4606066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4607999 4608068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGACGGAGGGCCGTCGATGTCAAGTACATCTCCTTGATGACAGGAAGCTGGAGCTGCTAGTACAGCCCA
AGCTTTTGGCCAAGGAGCTTCTTGACCTCGTGGCCTCTCATTTCAACCTGAAGGAGAAGGAGTACTTTGG
AATAGCATTCACAGATGAGACGGGACACTTGAATTGGCTCCAGCTCGATCGGAGAGTCCTGGAGCATGAC
TTCCCCAAAAAGTCTGGGCCGGTGGTTCTGTACTTCTGTGTCAGATTCTACATAGAGAGCATCTCCTACC
TGAAGGACAATGCTACCATTGAGCTCTTCTTCCTGAATGCCAAGTCCTGCATCTACAAGGAGCTGATTGA
TGTTGACAGTGAAGTGGTATTTGAATTAGCTTCCTATATTTTACAGGAAGCAAAAGGAGATTTCTCTAGC
AATGAGGTGGTGAGAAGTGATCTGAAAAAGCTGCCAGCGCTACCCACCCAAGCCCTGAAGGAACACCCCT
CCCTGGCCTACTGTGAAGACAGAGTCATTGAGTACTACAAGAAGCTGAATGGCCAGACGAGGGGACAAGC
AATCGTGAACTACATGAGTATCGTGGAGTCTCTGCCAACCTACGGTGTTCACTATTATGCAGTGAAAGAC
AAGCAGGGGATACCATGGTGGCTGGGACTGAGCTACAAAGGAATTTTCCAGTATGACTACCATGATAAAG
TGAAGCCAAGGAAGATATTTCAATGGAGACAGTTGGAGAATCTGTATTTCAGGGAAAAGAAGTTTTCCGT
GGAAGTTCATGACCCTCGCAGGGCTTCAGTGACCAGGAGGACTTTTGGGCACAGTGGCATTGCCGTGCAC
ACCTGGTATGCGTGTCCGGCATTGATCAAGTCCATTTGGGCGATGGCTATTAGCCAGCATCAGTTCTATC
TGGACAGAAAGCAGAGTAAGTCCAAGATCCATGCGGCCCGAAGTCTGAGCGAGATCGCCATTGACCTGAC
GGAAACAGGGACCCTGAAGACCTCAAAGCTGGCCAACATGGGGAGCAAGGGGAAGATCATCAGCGGGAGC
AGTGGGAGTCTGCTGTCCTCAGGTTCTCAGGAATCAGATAGCTCGCAGTCGGCCAAGAAAGACATGTTGG
CTGCCTTGAAATCCAGGCAGGAAGCTCTGGAGGAGACGCTGCGCCAGAGGCTGGAGGAACTGAAGAGATT
GTGTCTCCGGGAAGCTGAACTCACAGGAAAATTGCCTGTGGAATATCCCCTGGATCCAGGCGAGGAACCA
CCTATTGTTCGGAGGAGAATTGGAACAGCCTTCAAGCTGGATGAACAAAAAATCCTGCCTAAAGGAGAGG
AAGCTGAGCTGGAACGCCTGGAACGAGAGTTTGCGATTCAGTCCCAGATCACAGAGGCCGCCCGCCGTCT
AGCCAGTGACCCCAATGTCAGCAAAAAACTGAAGAAGCAAAGGAAGACCTCTTATTTGAATGCACTGAAG
AAGCTGCAGGAGATTGAAAATGCAATCAACGAGAACCGCATCAAGTCAGGGAAGAAACCCACCCAGAGGG
CTTCACTTGTCATCGATGATGGAAATATCGCCAGCGAAGACAGCTCTCTCTCGGATGCCCTCGTTCTGGA
AGATGAAGACTCTCAGGTTACCAGCACAATATCCCCCTTACAGTCGCCACACAAGGGACTCCCTCCTCGG
CCACCTTCATCACACAACAGGCCTCCTCCCCCACAGTCCCTGGAGGGACTCAGGCAGCTGCACTATCACC
GTACCGACTATGACAAGTCACCCTTAAAGCCCAAAATGTGGAGCGAGTCATCTTTAGATGAGCCTTATGA
GAAGGTGAAGAAACGCTCCTCCCACGGCCATTCCAGCAGCCACAAGCGCTTCCCCAGCACAGGAAGCTGT
ACCGAGGCAGGAGTAAGCAGCTCCTTGCAGAACAGTCCCATCCGAAGCCTCCCACATTGGAATTCCCAGT
CTAGCATGCCATCCACCCCAGACCTGCGCGTCCGGAGTCCCCACTATGTTCATTCCACAAGGTCAGTGGA
CATCAGCCCCACGAGACTGCACAGCCTTGCACTGCACTTTAGGCATCGAAGCTCCAGCCTGGAGTCCCAG
GGCAAGCTCCTGGGCTCGGAGAACGACACCGGAAGCCCCGACTTCTACACCCCGAGGACTCGTAGCAGCA
ATGGCTCAGACCCCATGGACGACTGCTCGTCCTGCACCAGCCACTCGAGCTCAGAGCACTACTACCCAGC
ACAGATGAACGCCAACTACTCAACGCTGGCTGAGGACTCGCCGTCCAAGGCGCGGCAGCGACAGCGGCAG
AGGCAGCGGGCAGCAGGCGCCCTGGGCTCAGCCAGCTCTGGCAGCATGCCCAACCTGGCGGCCCGCAGCG
GGGCTGCAAGCACTGGAGGTGGCGTGTACCTGCACAGCCAGAGCCAGCCCAGCTCTCAGTACCGCATCAA
GGAGTACCCACTATATATCGAGGGCAGTGCCACACCCGTGGTGGTACGCAGCCTGGAGAGCGACCAGGAG
GGCCACTACAGCGTCAAAGCGCAGTTTAAGACCTCCAACTCTTACACAGCTGGCGGCCTGTTCAAAGAGA
GCTGGCGCGGGGGTGGCGACGAGGGGGATGCAGGCCGCCTTACACCATCTCGGTCTCAGATCCTGCGGAC
TCCTTCGTTGGGGCGTGACGGCGCCCACGACAAAGGCTCCGGCCGTGCCGCCGTGTCTGATGAGCTGCGC
CAGTGGTACCAGCGCTCCACAGCCTCGCATAAGGAGCACAGCCGTCTGTCACACACCAGCTCCACCTCCT
CGGACAGCGGCTCTCAGTACAGCACCTCTTCCCAGAGCACCTTCGTGGCGCACAGCAGGGTCACCAGGAT
GCCCCAGATGTGCAAGGCCACGTCAGCTGCCTTACCTCAAAGCCAGAGAAGCTCAACACCGTCCAGTGAA
ATTGGAGCCACCCCACCAAGCAGCCCCCACCACATCCTGACCTGGCAGACTGGAGAAGCAACAGAAAACT
CTCCCATCATGGATGGGTCTGAGTCTCCAACACACCAAAGTACTGATGAATAG

Translation (1020 aa):
MTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNWLQLDRRVLEHD
FPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSS
NEVVRSDLKKLPALPTQALKEHPSLAYCEDRVIEYYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKD
KQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTRRTFGHSGIAVH
TWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLANMGSKGKIISGS
SGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLPVEYPLDPGEEP
PIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALK
KLQEIENAINENRIKSGKKPTQRASLVIDDGNIASEDSSLSDALVLEDEDSQVTSTISPLQSPHKGLPPR
PPSSHNRPPPPQSLEGLRQLHYHRTDYDKSPLKPKMWSESSLDEPYEKVKKRSSHGHSSSHKRFPSTGSC
TEAGVSSSLQNSPIRSLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHSLALHFRHRSSSLESQ
GKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAEDSPSKARQRQRQ
RQRAAGALGSASSGSMPNLAARSGAASTGGGVYLHSQSQPSSQYRIKEYPLYIEGSATPVVVRSLESDQE
GHYSVKAQFKTSNSYTAGGLFKESWRGGGDEGDAGRLTPSRSQILRTPSLGRDGAHDKGSGRAAVSDELR
QWYQRSTASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSE
IGATPPSSPHHILTWQTGEATENSPIMDGSESPTHQSTDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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