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Report for CCDS50479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50479.1 Public Mus musculus 19 Ablim1 23 108 98 CCDS HistoryNCBI Gene:226251Re-query CCDS DB by CCDS ID:50479.1Re-query CCDS DB by GeneID:226251See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111546.7 ENSMUSP00000107172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111546.7Link to Ensembl Protein Viewer:ENSMUSP00000107172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111546Re-query CCDS DB by Protein ID:ENSMUSP00000107172
Original member Current member NCBI NM_001103177.3 NP_001096647.1 Accepted alive Link to Nucleotide Sequence:NM_001103177.3Link to Protein Sequence:NP_001096647.1Re-query CCDS DB by Nucleotide ID:NM_001103177Re-query CCDS DB by Protein ID:NP_001096647Link to BLAST:NP_001096647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096647.1 701 Q8K4G5-2 701 100% 0 0

Chromosomal Locations for CCDS 50479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57037224 57037337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57039407 57039487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57040487 57040561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57041415 57041422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57041915 57041975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57042997 57043061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57043796 57043898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57044881 57044972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57046925 57047065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57049462 57049509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57051130 57051234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57061253 57061382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57063766 57063801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57068091 57068246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57068860 57068937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57079813 57079871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57083516 57083603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57132862 57132955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57134582 57134708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57152273 57152382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57155152 57155335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57173325 57173459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57197299 57197314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGTGAAAGAAAAAGTGGCCCATCCTCAGGACCCTCACCACTCGTCGGAGAAACCTGTCATTCACTGCC
ATAAATGCGGGGAGCCATGCAAGGGCGAAGTGCTACGGGTGCAGACCAAGCATTTCCACATCAAATGCTT
CACCTGCAAAGTGTGCGGCTGCGACCTGGCCCAGGGGGGCTTCTTCATAAAGAACGGGGACTATCTGTGT
ACCCTGGACTACCAGAGGATGTATGGGACACGGTGCCACGGCTGTGGGGAGTTCGTGGAGGGCGAGGTGG
TAACTGCCCTGGGCAAGACCTACCACCCCAACTGCTTCGCCTGTACAATCTGCAAGCGCCCATTTCCACC
CGGAGACCGAGTCACATTCAACGGGAGAGACTGTCTTTGTCAGCTCTGTGCACAGCCGATGTCTTCCAGC
CCTAAAGAAGCCTCCTGCTCCAGCAACTGCGCCGGCTGTGGAAGGGACATTAAGAACGGACAGGCGCTGC
TAGCTCTGGACAAGCAGTGGCATTTGGGCTGCTTCAAGTGCAAGTCCTGTGGGAAGGTCCTCACCGGCGA
GTACATCAGCAAGGATGGCTCCCCATACTGTGAGAAAGACTACCAGGGGCTCTTTGGGGTGAAGTGTGAA
GCCTGTCACCAGTTTATCACAGGAAAAGTCCTGGAGGCAGGCGACAAGCATTATCATCCCAGCTGCGCAC
GATGCAGCAGATGCAATCAGATGTTCACAGAAGGGGAAGAAATGTATCTGCAAGGTTCTACCGTGTGGCA
TCCCGACTGTAAGCAGTCCACTAAGACAGAGGAGAAGCTGCGGCCCACCAGGACCTCCTCTGAAAGTATC
TATTCTAGACCAGGCTCCAGCATCCCTGGTTCACCAGGCCATACTATCTATGCAAAAGTAGACAATGAAA
TCCTGGATTACAAGGATTTAGCAGCCATCCCCAAGGTCAAGGCGATCTATGACATCGAGCGTCCAGATCT
CATTACCTATGAGCCTTTCTACACATCAGGCTATGAGGACAAGCAGGAGAGACAGAGCCTTGGAGAGTCT
CCAAGGACTTTGTCTCCAACTCCATCTGCAGAAGGTTATCAAGATGTCCGGGATCGGATGATCCACAGGT
CCACCAGCCAGGGCTCCATCAACTCCCCTGTGTATAGCCGGCACAGTTACACTCCAACTACGTCTCGCTC
GCCCCAGCACTTCCACCGACCTGGCAATGAGCCGTCCAGCGGCCGGAACTCCCCTCTCCCCTACCGGCCC
GACAGCCGCCCTCTAACTCCAACTTACGCTCAGGCCCCTAAACATTTCCATGTTCCAGATCAAGGGATCA
ACATTTACCGAAAACCACCCATCTACAAACAGCATGCTGCCTTGGCAGCCCAGAGCAAGGCTTCAGAAGA
TATCATCAAGTTTTCCAAGTTCCCAGCAGCCCAGGCGCCAGATCCCAACGAGATACCAAAGATTGAGACG
GACCACTGGCCGGGTCCCCCCTCACTTGCCGCCGTAGGAACTGACCCGAGGCGCAGATCAAGTGGCAGAG
AGGAAGATGAAGAGGAGCTTTTGAGACGCCGGCAGCTTCAAGAAGAACAGTTGATGAAGCTCAACTCAGG
CCTGGGGCAGCTGATCCTGAAGGAAGAGATGGAGAAGGAGAGCAGAGAAAGAGCATCGCTGGCCAGTCGC
TATGACTCTCCCCTCCACTCAGCTTCCCATGCTCCATCATCTAAAACTTCATCTCTCCCTGGTTATGGAA
AGAATGGCCTTCACCGGCCAGTTTCCACAGACTTCGCTCAGTACAACAGCTACGGAGACATCAGTGGCGG
AGTTCGAGACTACCAGACCCTCCCAGATGGCCACATGCCTGCAGTGAGAATGGACAGAGGAGTATCCATG
CCCAACATGTTGGAACCAAAGATATTTCCATATGAGATGCTCATGGTGACCAACAGAGGGCGCAACAAAA
TCCTGAGAGATGTGGATAGAACCCGGCTAGAGCGCCACTTAGCCCCAGAAGTATTTTGGGAGATCTTTGG
GATGTCCATACAGGAATTTGACAAGTTACCTCTTTGGAGACGCAACGACATGAAGAAAAAAGCTAAACTC
TTCTAA

Translation (701 aa):
MVKEKVAHPQDPHHSSEKPVIHCHKCGEPCKGEVLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGDYLC
TLDYQRMYGTRCHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSS
PKEASCSSNCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGSPYCEKDYQGLFGVKCE
ACHQFITGKVLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESI
YSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQERQSLGES
PRTLSPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRP
DSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHAALAAQSKASEDIIKFSKFPAAQAPDPNEIPKIET
DHWPGPPSLAAVGTDPRRRSSGREEDEEELLRRRQLQEEQLMKLNSGLGQLILKEEMEKESRERASLASR
YDSPLHSASHAPSSKTSSLPGYGKNGLHRPVSTDFAQYNSYGDISGGVRDYQTLPDGHMPAVRMDRGVSM
PNMLEPKIFPYEMLMVTNRGRNKILRDVDRTRLERHLAPEVFWEIFGMSIQEFDKLPLWRRNDMKKKAKL
F


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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