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Report for CCDS50465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50465.1 Public Mus musculus 19 Slk 23 108 98 CCDS HistoryNCBI Gene:20874Re-query CCDS DB by CCDS ID:50465.1Re-query CCDS DB by GeneID:20874See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026043.11 ENSMUSP00000026043.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026043.11Link to Ensembl Protein Viewer:ENSMUSP00000026043.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026043Re-query CCDS DB by Protein ID:ENSMUSP00000026043
Original member Current member NCBI NM_001164639.1 NP_001158111.1 Accepted alive Link to Nucleotide Sequence:NM_001164639.1Link to Protein Sequence:NP_001158111.1Re-query CCDS DB by Nucleotide ID:NM_001164639Re-query CCDS DB by Protein ID:NP_001158111Link to BLAST:NP_001158111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158111.1 1202 O54988-2 1202 100% 0 0

Chromosomal Locations for CCDS 50465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47580194 47580343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47608905 47609069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47611575 47611623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47611902 47612051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47615196 47615268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47615406 47615600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47616522 47616603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47619191 47619319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47619603 47620952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47622236 47622366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47622571 47622694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47625305 47625484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47635469 47635598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47636343 47636467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47637210 47637398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47637642 47637767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47638876 47638989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47641947 47642093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3609 nt):
ATGTCCTTCTTCAATTTCCGTAAGATCTTCAAGTTGGGGAGCGAGAAGAAGAAGAAACAGTACGAACACG
TGAAGAGAGACCTGAACCCCGAAGAGTTTTGGGAGATTATTGGAGAACTGGGCGACGGAGCCTTCGGGAA
AGTCTATAAGGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAA
GAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGC
TTCTAGATGCCTTCTATTACGAGAACAACCTTTGGATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGA
TGCTGTGATGCTTGAACTTGAGAGACCATTAACTGAATCCCAAATCCAAGTAGTCTGCAAGCAGACATTA
GAGGCATTGAATTACTTACATGACAATAAAATCATCCACCGAGATCTAAAAGCTGGCAATATTCTCTTTA
CCTTAGATGGAGACATTAAATTAGCGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAG
GGATTCATTTATTGGCACACCATATTGGATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGA
CCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCAC
CTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACA
GCCATCAAAATGGTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGG
TGGACCACGTCTCAGCTGTTGCAGCATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGA
TTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGC
AGAGAATGCTCTGCCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAA
GATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGG
ATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCA
TGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGG
AGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATT
CAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGA
AGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACA
CATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACA
ATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTAT
AACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTC
AGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCA
CAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCC
AGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACC
CTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGAC
TTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTT
GGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCC
AGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAA
TGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGA
CTCAGGGACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGC
AAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAGGAGACAAGAAGACAGAAGAAAACATTGAAGAAAACAC
GCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAA
AACGGAGGAACTGCGCTTTCTCAGGCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAG
CGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGG
AGATGCTGAGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAAT
TGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAG
AAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAGGAACAAGAATTTGTTCAGAAGC
AACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGA
GAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAGCTCGAGAAGCCGCAATTTGGGAGCTTGAAGAG
CGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATC
AGCTGCTAAAACGCCATGAGAAGGAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACT
GAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATG
GCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAAC
AGTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCA
AATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAGAATGAAAAATGC
CACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGG
AGTGGAGAGAGAAGCTGAGACCCAGGAAGAAGACACTGGAAGAAGAGTTTGCCAGGAAACTGCAGGAACA
GGAAGTGTTCTTTAAAATGACTGGGGAGTCCGAATGTCTTAATCCATCAGCACAGAGCCGGATCTCTAAA
TTCTACCCTATTCCCACCTTACATTCCACTGGGTCATAG

Translation (1202 aa):
MSFFNFRKIFKLGSEKKKKQYEHVKRDLNPEEFWEIIGELGDGAFGKVYKAQNKETNVLAAAKVIDTKSE
EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTL
EALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDR
PYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSKWSSNFKDFLRKCLEKNVDAR
WTTSQLLQHPFVTVDSNKPVRELIAEAKAEVTEEVEDGKEEDEEEEAENALPIPANKRASSDLSIASSEE
DKLSQNACILESVSERTEQSTSEDKFSNKILNEKPTTDGPEKAVDEHASDVNLETGAELNDQTVGIHENG
REKKRPKLENLPDTQDQQTVDVNSVSEENENNRVTLETNTDCLKPEEDRNKENQETLESKLIQSEEINDT
HIQTMDLVSQETGEKEADFQAVDNEVGLTKEETQEKLGKDGTAQKVITSDRSSEVGTDEALDDTQKAAEL
SKAAQSGEGDEALAPTQTLAEKPTEGPEAGGAEEEPPGGERVEDKQPEQQPAVCEAEGQLTSTSETTRAT
LEQPETDEVEQVSESNSIEELERLVVTGAEARALGSEGEAAATEVDLERKENAQKVPVKAESQAPAASQP
SEPHPVLIPSININSETTENKEEMGALPKPETILPPEPEHEKGNDTDSGTGSTVENSSGDLNLSISSFLS
KAKDSGSVSLQETRRQKKTLKKTRKFIVDGVEVSVTTSKIVTDSDSKTEELRFLRRQELRELRLLQKEEQ
RAQQQLNGKLQQQREQIFRRFEQEMLSKKRQYDQEIENLEKQQKQTIERLEQEHTNRLRDEAKRIKGEQE
KELSKFQNVLKNRKKEEQEFVQKQQQELDGSLKKIIQQQKAELANIERECLNNKQQLMRAREAAIWELEE
RHLQEKHQLLKQQLKDQYFMQRHQLLKRHEKETEQMQRYNQRLIEELKNRQTQERARLPKIQRSEAKTRM
AMFKKSLRINSTATPDQDREKIKQFAAQEEKRQKNERMAQHQKHESQMRDLQLQCEANVRELHQLQNEKC
HLLVEHETQKLKELDEEHSQELKEWREKLRPRKKTLEEEFARKLQEQEVFFKMTGESECLNPSAQSRISK
FYPIPTLHSTGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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