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Report for CCDS50431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50431.1 Public Mus musculus 19 Pde6c 23 108 98 CCDS HistoryNCBI Gene:110855Re-query CCDS DB by CCDS ID:50431.1Re-query CCDS DB by GeneID:110855See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112329.2 ENSMUSP00000107948.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112329.2Link to Ensembl Protein Viewer:ENSMUSP00000107948.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112329Re-query CCDS DB by Protein ID:ENSMUSP00000107948
Original member NCBI NM_001170959.1 NP_001164430.1 Updated not alive Link to Nucleotide Sequence:NM_001170959.1Link to Protein Sequence:NP_001164430.1Re-query CCDS DB by Nucleotide ID:NM_001170959Re-query CCDS DB by Protein ID:NP_001164430
Current member NCBI NM_001170959.2 NP_001164430.1 Accepted alive Link to Nucleotide Sequence:NM_001170959.2Link to Protein Sequence:NP_001164430.1Re-query CCDS DB by Nucleotide ID:NM_001170959Re-query CCDS DB by Protein ID:NP_001164430Link to BLAST:NP_001164430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164430.1 836 Q91ZQ1-2 836 100% 0 0

Chromosomal Locations for CCDS 50431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38132946 38133425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38139971 38140123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38140223 38140312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38141367 38141507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38150588 38150662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38151530 38151594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38151697 38151763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38153694 38153741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38157385 38157534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38158415 38158558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38159713 38159781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38161891 38162037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38162274 38162381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38162761 38162870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38169377 38169464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38175635 38175735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38178048 38178155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38178258 38178321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38180171 38180254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38180776 38180932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38183678 38183739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGGGTGAGATCAGCCAAGAGGCCGTGGAGCGCTACCTGGAGAAGAACCCTTGTTTTGCCAAAGAGTATT
TTGACAAGAAACTACGGGTGGAGGCACTGGGGGTGATCTTCAAAAACAGCCATGCAGGGGTCCAGACCGG
CTTGTCGCTCCCTGAGATGACACAGGTGGAGGAGTCGGCCGTGTGCCTGGAGCTACTGCAGTGTATGCAG
GACGAGGCCGGAAGCGCGGAGCAGATGGCTCACCGGGCACTGCAGAGGCTCGCTCAACTTCTGCAGGCTG
ATTGCTGCAGTATGTTCTCGTGCAGAGCAAGAAACGGCATACCAGAGGTGGCCTCCAGGCTGCTGAACGT
CACCCCAACTTCTAAGTTTGAGGACAACCTCGTGGCCCCTGACAGAGAAGTTGTATTTCCGTTGGACATT
GGGATAGTTGGCTGGGTCGCTCATGTGAAGAAAGCCCTTAATGTCTCAGATGTCAAAAAGAACAGCCATT
TTTCTGACTTTATGGACAAGCAAACTGGATATGTCACCAGGAATCTGCTAGCAGTCCCGATCGTGGCAGG
CAAGGAGGTCCTTGCTGTGGTCATGGCAGTGAACAAAATCAGCGCTCCCGAGTTTTCCAAACAGGATGAG
GAGGTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACA
GTGTGGAGTCCCGGAGAAGCCAGATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGT
TGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGT
CTTCTGGACATGACCAAGGAGAAGGAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTT
ATAAAGGACCAAAGACTCCAGATGGCAGGGAAATCATCTTCTATAAAATCATCGATTACATTTTACATGG
AAAAGAAGAGATCAACGTGATTCCGTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACA
TACGTTGCAGAAAATGGATTTATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAGA
AAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGA
AGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACAT
ATCACTGAGACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACA
AGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAAT
CAGCTCTATTCTGAAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTC
CTGGCCATATTGAAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACT
TCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAA
ATTCAAAGTCCCTGTAGAGGTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACC
TACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATGACAGGAAGACTAA
AGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAG
AGGCACCAATAACTTGTACCAAATGAAGTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTA
GAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAGAGTTTAAACATCTTCCAGAATCTAA
ACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTA
TTTCAAGAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACC
ATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCATGGCCATGATGATGACTGCCTGTGACC
TGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAGCCTATGATGGACAGAAGCAAAAAGGATGAACT
CCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAGGAGTTCTCTCGGTTTCAT
GGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGT
ACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAGC
TGCCACAGATTTAGGAGGCAGCGCCGAAGACAAAAAGTCCAAAACATGCTTAATGTTATAA

Translation (836 aa):
MGEISQEAVERYLEKNPCFAKEYFDKKLRVEALGVIFKNSHAGVQTGLSLPEMTQVEESAVCLELLQCMQ
DEAGSAEQMAHRALQRLAQLLQADCCSMFSCRARNGIPEVASRLLNVTPTSKFEDNLVAPDREVVFPLDI
GIVGWVAHVKKALNVSDVKKNSHFSDFMDKQTGYVTRNLLAVPIVAGKEVLAVVMAVNKISAPEFSKQDE
EVFSKYLSFVAVALRLQHTSYLYSVESRRSQILMWSANKVFEELTDVERQFHKALYTIRTYLNCDRYSIG
LLDMTKEKEFYDEWPIKLGEVEPYKGPKTPDGREIIFYKIIDYILHGKEEINVIPSPPADHWTLVSGLPT
YVAENGFICNMLNAPADEYFTFQKGPVDETGWVIKNVLSLPIVNKKEDIVGVATFYNRKDGKPFDEHDEH
ITETLTQFLGWSLLNTDTYERVNKLESRKDIAQEMVMNLTKATPDEISSILKFKEKLNVEVIEECEERQL
LAILKEDLPDPRTADLYEFCFSDFPITEHELVKCGLRLFLEINVVEKFKVPVEVLTRWMYTVRKGYRPVT
YHNWRHGFNVGQTMFTLLMTGRLKKYYTDLEAFAMLAAAFCHDIDHRGTNNLYQMKSTSPLARLHGTSIL
ERHHLEYSKTLLQDESLNIFQNLNKRQFETVIHLFEVAIIATDLALYFKKRTMFQKIVDTCEQMQSEEET
IKYVTSDPTKKEVIMAMMMTACDLSAITKPWEVQSQPMMDRSKKDELPKLQVGFIDFVCTFVYKEFSRFH
GEITPMLNGLQNNRVEWKSLAEEYEAKVKVTEEEAGKQEEEASDGKAATDLGGSAEDKKSKTCLML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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