NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50337.1 Public Mus musculus 18 Zfp236 23 108 98 CCDS HistoryNCBI Gene:329002Re-query CCDS DB by CCDS ID:50337.1Re-query CCDS DB by GeneID:329002See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171071.8 ENSMUSP00000130004.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171071.8Link to Ensembl Protein Viewer:ENSMUSP00000130004.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171071Re-query CCDS DB by Protein ID:ENSMUSP00000130004
Original member NCBI NM_177832.3 NP_808500.2 Updated not alive Link to Nucleotide Sequence:NM_177832.3Link to Protein Sequence:NP_808500.2Re-query CCDS DB by Nucleotide ID:NM_177832Re-query CCDS DB by Protein ID:NP_808500
Current member NCBI NM_177832.4 NP_808500.2 Accepted alive Link to Nucleotide Sequence:NM_177832.4Link to Protein Sequence:NP_808500.2Re-query CCDS DB by Nucleotide ID:NM_177832Re-query CCDS DB by Protein ID:NP_808500Link to BLAST:NP_808500.2

Chromosomal Locations for CCDS 50337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 82597633 82597754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82598947 82599123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82601260 82601389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82604189 82604386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82607748 82607879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82609288 82609475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82617710 82617889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82618743 82618983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82620318 82620463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82621091 82621456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82622960 82623063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82624204 82624486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82628154 82628366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82629971 82630122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82630587 82630690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82632978 82633129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82633687 82633788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82636733 82636989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82639320 82639580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82640100 82640241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82644057 82644260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82645969 82646241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82656949 82657177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82658003 82658206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82668572 82668744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82671686 82671810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82674307 82674485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82680592 82680756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82682145 82682287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82692643 82692697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5400 nt):
ATGCCGCGGGGCCGCCCCCCGAAGCCCCGGGACGGCGCGGCGCGCGGCGACTCCGATGGGGTTTTGGCGT
TGAATGATGAGGACATTGATGATGACTGCCCGATTCCAAACTTCCACAAATGCGAAATCTGTCTGCTGTC
TTTTCCAAAAGAGTCCCAATTTCAGCGTCACATGAGGGAGCATGAGCAAAATGACAAGCCTCACCGATGT
GACCAGTGCCCCCAAACATTTAATGTTGAATTCAACCTGACACTTCATAAATGTACACACAATGCGGAAG
ATCCTGTTTGTCCCGTGTGCAACAAGAAGTTCTCCAGAGTGGCCAGTCTCAAAGCACATATTATGCTCCA
CGAGAAGGAAGAGAACCTCATTTGCTCTGAGTGTGGGGATGAGTTCACACTGCACAGCCAGCTGGCCATT
CACATGGAGGAACACCGGCAGGAGCTGGCCAACACCCGAGCGCACACCTGCAAGGCCTGTAAGAAGGAGT
TCGAGACATCGCCAGAGCTGAAGGAGCACATGAAGACTCACTGTAAAGTTAGGGCGTCAGGTACAAGATC
TTATAATCGGAACATTGACAGAAGCAGCTTCCCGTACTCATGCCCACACTGCGGAAAGACGTTCCAGAAG
CCCAGCCAGTTAACGCGACACATCAGGATACACACAGGTGAAAGGCCATTCAAGTGCAGTGAGTGTGGAA
AAGCTTTTAACCAGAAAGGGGCGCTGCAGACCCATATGATCAAGCACACAGGAGAGAAGCCACACGCTTG
TGCCTTTTGTCCTGCCGCCTTTTCTCAGAAGGGGAACCTGCAGTCCCATGTTCAGAGGGTCCACTCAGAG
GCCACGATCTTTCAGACTTTACCTCTGCAGCAGGTGGAAGCCCAGGTCTCCTCAGTGTCCAGTGAGCAGA
GTTCTCAGGCAGTGAGTGACGTCATCCAGCAGCTTCTGGAACTGTCTGAGCCCGGCCCAGTGGAGGCACA
GCAGTCCCCACAGTCTGGGCGACAACTGAGTGTGACAGTGGGCATCAACCAGGACATCCTCCAGCAAGCC
TTAGAAAACAGTGGGCTGTCTTCACTTCCAGTTGCAGCTCCTCCCAGCGACTGCAGCCATGCTCAGACGG
CTACAGTGTCCACACAGAGTCCACACGCCTCCAGTGTCTCTGCAGAGCAAGCTGATCCCATGGATGCAGA
GCAGGAAAAGGGACAGGAAAGCCCTGAAAAGACGGATAAGAAAGAGAAAAAACTTCTGAAGAAGAAATCC
CCGTTCCTACCTGGGTCCATTCGGGAGGAGAATGGGGTGCGGTGGCATGTGTGTCCCTACTGCACGAAGG
AGTTCCGGAAGCCCAGTGACCTGGTGCGCCACATCCGCATCCACACCCATGAAAAGCCCTTCAAGTGTCC
ACAGTGTTTCCGGGCCTTTGCTGTGAAGAGCACACTGACTGCTCACATTAAAACTCACACGGGCATCAAG
GCTTTCAAGTGCCAATACTGCATGAAGAGCTTTTCCACCTCAGGGAGCCTCAAGGTGCACATCCGCCTAC
ACACAGGAGTTAGACCTTTTGCTTGTCCTCACTGTGATAAGAAGTTCCGCACCTCAGGCCACAGGAAGAC
TCACGTGGCTTCCCACTTTAAGCACACGGAGCTGAGGAAGCTGAGGCAGCAGCGGAAGCCTGTGAAGGGT
CGGGTGGGCAAGAGCAGCGTTCCTGTCCCCGACATTCCTTTGCAAGAACCCATTCTCATAACTGACCTAG
GTCTTATCCAGCCCATTCCAAAAAACCAATTTTTTCAAAATTATTTTAATAATAGTTTTGGCAATGAAGC
AGATAGACCATACAAATGTTTCTACTGTCATCGAGCATATAAAAAGTCTTGCCACCTAAAACAGCACATC
AGATCACATACAGGTGAAAAGCCTTTCAAATGCTCCCAGTGTGGCCGAGGCTTCGTCTCTGCAGGCGTGC
TCAAAGCCCATGTCCGGACGCACACGGGGCTGAAGTCTTTCAAGTGTCTGATCTGCAATGGAGCCTTTAC
CACAGGTGGCAGCTTACGGCGACACATGGGCATACATAATGACCTCCGTCCCTACATGTGTCCCTATTGC
CAGAAAACATTTAAGACTTCACTGAACTGCAAGAAACACATGAAAACTCACAGGTACGAACTGGCCCAGC
AGCTCCAGCAGCACCAGGAGGCCTCCTCCATGGATGACGATAGCACCGTGGACCAGCAGAGCATGCACGT
GGCGGCCCCCATGCCTGTGGAGATCGAAAGTGCAGAGCTGCAGCAGACTCCAGAGACAGTGGCCGCAGAC
CCTGAGTCAATACTGGAACTAGGGCCACAGCATGTGGTAGGCACAGAAGATGCAGCGCTTGGACAGCAGT
TGGCAGATCAGCCTTTGGAGGCGGATGAAGATGGGTTCACAGCTTCCCAGGCTCCTCTCCCAGGGCACAT
GGACCAGTTTGAAGAGCAGGGCACTCCACAGCCATCCTTTGAGTCGGCAGGACTTCCACAAGGTTTCACG
GTGACTGACACGTACAGTCAGCAGACATCCTTCCCACCTGTGCAGCAGCTGCAGGACTCTAGCACCCTCG
AGTCCCAGGCCTTGTCCACGAGTTTCCACCAGCAAAACTTACTGCAGGTCCCCAACTCTGATGCCATCAA
CGTGGCAACTCGTTTGCTTCCAGAGTCATCTCAAGAGGATCTGGACCTACAAACACAAGGCCCCCAGTTC
CTGGAGGACAGCGAGGACCAGAGCAGGCGCTCATACAGGTGTGACTACTGCAACAAGGGCTTCAAGAAGT
CCAGCCACTTGAAGCAGCATGTGCGCTCACACACGGGGGAGAAGCCCTACAAGTGCAAGCTCTGTGGGCG
TGCTTTTGTCTCCTCCGGTGTCCTCAAGTCCCACGAGAAGACACACACAGGTGTCAAGGCCTTCAGCTGC
AGCATCTGCAATGCGTCTTTCACCACCAATGGGAGCCTCACGCGGCACATGGCCACACACATGAGCATGA
AGCCTTACAAGTGTCCATTCTGTGAAGAGGGCTTCCGCACTGCGGTCCACTGTAGAAAACACATGAAGAG
ACACCAAGCAGTTTCGTCTGCAGCCGCAGCAGCTGCAGAGACAGAGGGAGGAGACACATGTGTGGAGGAA
GATGAAGAAAATTCTGACAGAAGTGCATCAAGAAAGCCTCGTCCTGAGGTCATTACTTTCACAGAGGAGG
AGACAGCCCAGCTGGCCAAAATTCAGCCCCAGGAGAGTGCTACAGTGTCTGAGAAGGTCCTGGTGCAGTC
GGCTGCAGAAAAGGACCGCATCAGCGAGATGAAGGATAAGCAGGCAGAGCTTGAGGCTGAACCCAAGCAC
GCCAACTGTTGCACATATTGTCCGAAGAGCTTCAAGAAGCCCAGTGACCTGGTGAGGCATGTTAGAATCC
ATACTGGAGAAAAGCCATATAAGTGTGATGAATGTGGGAAGAGCTTTACTGTGAAGTCCACTCTAGATTG
CCACGTGAAGACCCACACAGGCCAGAAGCTGTTCAGCTGCCATGTCTGCAGCAACGCCTTCTCCACAAAG
GGAAGCCTGAAGGTACACATGCGCCTACACACAGGAGCAAAGCCTTTCAAATGCCCTCACTGTGAGCTGC
GCTTCAGGACTTCTGGGAGAAGGAAGACTCATATGCAGTTTCACTACAAATCAGACCCAAAGAAGGCCAG
GAAGCCTGTCACACGAAGCTCTTCAGAAAGTCTCCAGTCTGTGAACCTTCTCAACTCATCTTCCACGGAC
CCAAATGTGTTCATCATGAACAACTCTGTCCTAACAGGGCAGTTTGATCAGAATGTGCTTCAGCCAGGCT
TGGTCGGCCAGGCTATCCTTCCTGCCTCTGTCTCAGCTGGTGGTGACTTGACAGTATCTTTGACTGATGG
AAGTTTGGCCACTCTGGAAGGTATCCAGTTACAGCTAGCTGCTAACTTGGTTGGACCAAATGTTCAGATT
TCTGGGATCGATGCCTCCAGCATCAACAATATCACATTGCAGATTGATCCGAGCATCTTGCAGCAAACAC
TACAGCAGGGCAGCCTGCTTGCTCAGCCAATCACAGGCGAGTCTAGCACAGCCTCCCAGAACAGTTCTCT
TCAGACATCAGACAGCACCGTCCCAGCCAGCGTCGTTATCCAGCCTCTGTCAGGCCTGTCCTTACAGCCC
ACAGTGACATCTGCCAATCTGACCATTGGCCCACTGTCTGAACAGGACTCAGTGCTGACCACCAGCAGCA
GCGGTTCACAGGACCTCTCTCAAGTGATGACTTCACAAGGCCTTGTGTCCACTTCGACGGGCCCGCATGA
GATCACCCTGACCATCAACAACTCCAGTCTCAGCCAGGTCCTAGCCCAGGCTGCTGGCCCCACCGCCTCC
TCATCCTCGGGCTCACCACAGGAGATCACCCTGACCATCTCTGAACTTAATCCTTCGAGTGGGAGCCTGC
CTTCAACAGCACCGATGTCACCGTCAGCCATTTCAGCCCAGAACCTAGTCATGTCTTCGTCAGGGGTGGG
TGCTGATGCCAGTGTCACGCTGACGCTGGCTGATACTCAGGGCGTGCTGTCTGGAGGGCTGGATACGGTT
ACACTGAACATCACTTCTCAGGGCCAGCAGTTCCCAGCATTGCTCACGGATCCCTCTCTCTCAGGCCAAG
GTGGAGCAGGCTCACCACAAGTCATCTTAGTGAGCCACACCCCACAGTCCTCCTCCGCTGCTGGGGAAGA
AATAGCTTACCAGGTGACTGATGTCCCCGCCCAGCTGACCCCTCACAGCCAGCCTGAAAAGGAGGGCCTT
TCCCACCAGTGCCTGGACTGCGACCGTGCCTTCTCCTCAGCCGCCGTGCTCATGCACCACAGCAAGGAGG
TGCACGGGAAGGAGCGAATCCATGGCTGCCGGGTCTGCAGGAAGGCCTTCAAGCGTGCCACACACCTCAA
GGAGCACATGCTGACCCACCAGGCCGGCCCCTCGCTCAGCTCTCAGAAGCCCAGAGTGTTCAAGTGTGAC
TCCTGCGAAAAGGCATTTGCCAAACCAAGCCAGCTGGAGCGACACAGCCGCATTCACACAGGGGAGCGGC
CATTCCACTGCACTCTGTGTGACAAAGCCTTCAACCAGAAGAGCGCGCTGCAGGTGCACTTGAAGAAGCA
CACGGGCGAGCGGCCCTACAGGTGTGACTACTGCGTCATGGGCTTCACGCAGAAGAGCAACATGAAGCTG
CACATGAAGCGAGCACACAGCTTTGTGGGGACCTTGCAGGCAGCCACTGTGGTCCAGGAACAGGATGGGG
ACGAGCTAAGGACCCTCCACTTGGAGGAGGTGGTGCCTGAGGCGGCGGGTGAATGGCAGACCCTGACCAA
TGTGTTCTGA

Translation (1799 aa):
MPRGRPPKPRDGAARGDSDGVLALNDEDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRC
DQCPQTFNVEFNLTLHKCTHNAEDPVCPVCNKKFSRVASLKAHIMLHEKEENLICSECGDEFTLHSQLAI
HMEEHRQELANTRAHTCKACKKEFETSPELKEHMKTHCKVRASGTRSYNRNIDRSSFPYSCPHCGKTFQK
PSQLTRHIRIHTGERPFKCSECGKAFNQKGALQTHMIKHTGEKPHACAFCPAAFSQKGNLQSHVQRVHSE
ATIFQTLPLQQVEAQVSSVSSEQSSQAVSDVIQQLLELSEPGPVEAQQSPQSGRQLSVTVGINQDILQQA
LENSGLSSLPVAAPPSDCSHAQTATVSTQSPHASSVSAEQADPMDAEQEKGQESPEKTDKKEKKLLKKKS
PFLPGSIREENGVRWHVCPYCTKEFRKPSDLVRHIRIHTHEKPFKCPQCFRAFAVKSTLTAHIKTHTGIK
AFKCQYCMKSFSTSGSLKVHIRLHTGVRPFACPHCDKKFRTSGHRKTHVASHFKHTELRKLRQQRKPVKG
RVGKSSVPVPDIPLQEPILITDLGLIQPIPKNQFFQNYFNNSFGNEADRPYKCFYCHRAYKKSCHLKQHI
RSHTGEKPFKCSQCGRGFVSAGVLKAHVRTHTGLKSFKCLICNGAFTTGGSLRRHMGIHNDLRPYMCPYC
QKTFKTSLNCKKHMKTHRYELAQQLQQHQEASSMDDDSTVDQQSMHVAAPMPVEIESAELQQTPETVAAD
PESILELGPQHVVGTEDAALGQQLADQPLEADEDGFTASQAPLPGHMDQFEEQGTPQPSFESAGLPQGFT
VTDTYSQQTSFPPVQQLQDSSTLESQALSTSFHQQNLLQVPNSDAINVATRLLPESSQEDLDLQTQGPQF
LEDSEDQSRRSYRCDYCNKGFKKSSHLKQHVRSHTGEKPYKCKLCGRAFVSSGVLKSHEKTHTGVKAFSC
SICNASFTTNGSLTRHMATHMSMKPYKCPFCEEGFRTAVHCRKHMKRHQAVSSAAAAAAETEGGDTCVEE
DEENSDRSASRKPRPEVITFTEEETAQLAKIQPQESATVSEKVLVQSAAEKDRISEMKDKQAELEAEPKH
ANCCTYCPKSFKKPSDLVRHVRIHTGEKPYKCDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTK
GSLKVHMRLHTGAKPFKCPHCELRFRTSGRRKTHMQFHYKSDPKKARKPVTRSSSESLQSVNLLNSSSTD
PNVFIMNNSVLTGQFDQNVLQPGLVGQAILPASVSAGGDLTVSLTDGSLATLEGIQLQLAANLVGPNVQI
SGIDASSINNITLQIDPSILQQTLQQGSLLAQPITGESSTASQNSSLQTSDSTVPASVVIQPLSGLSLQP
TVTSANLTIGPLSEQDSVLTTSSSGSQDLSQVMTSQGLVSTSTGPHEITLTINNSSLSQVLAQAAGPTAS
SSSGSPQEITLTISELNPSSGSLPSTAPMSPSAISAQNLVMSSSGVGADASVTLTLADTQGVLSGGLDTV
TLNITSQGQQFPALLTDPSLSGQGGAGSPQVILVSHTPQSSSAAGEEIAYQVTDVPAQLTPHSQPEKEGL
SHQCLDCDRAFSSAAVLMHHSKEVHGKERIHGCRVCRKAFKRATHLKEHMLTHQAGPSLSSQKPRVFKCD
SCEKAFAKPSQLERHSRIHTGERPFHCTLCDKAFNQKSALQVHLKKHTGERPYRCDYCVMGFTQKSNMKL
HMKRAHSFVGTLQAATVVQEQDGDELRTLHLEEVVPEAAGEWQTLTNVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH