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Report for CCDS50333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50333.1 Public Mus musculus 18 Hsbp1l1 23 108 98 CCDS HistoryNCBI Gene:66255Re-query CCDS DB by CCDS ID:50333.1Re-query CCDS DB by GeneID:66255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166219.1 ENSMUSP00000132852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166219.1Link to Ensembl Protein Viewer:ENSMUSP00000132852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166219Re-query CCDS DB by Protein ID:ENSMUSP00000132852
Original member Current member EBI ENSMUST00000237192.1 ENSMUSP00000158095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237192.1Link to Ensembl Protein Viewer:ENSMUSP00000158095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237192Re-query CCDS DB by Protein ID:ENSMUSP00000158095
Original member Current member NCBI NM_001136181.1 NP_001129653.1 Accepted alive Link to Nucleotide Sequence:NM_001136181.1Link to Protein Sequence:NP_001129653.1Re-query CCDS DB by Nucleotide ID:NM_001136181Re-query CCDS DB by Protein ID:NP_001129653Link to BLAST:NP_001129653.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129653.1 72 B2RXB2 72 100% 0 0

Chromosomal Locations for CCDS 50333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80230556 80230561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80233415 80233509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80235449 80235515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80236696 80236746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (219 nt):
ATGGACACCCGGACGCCGGAAGTTCCCTGTGGGGACTTGCTGCAGAACGCGGCTGAGAATCTACTTCTAG
AGGTTGAAGAACATTTCCAAGCTCTGACTACAACATTAAACCTCAGAATGGAAGAGATGGGAAGTCGCAT
CGAGGACTTACAGAGAAACGTGGATGACCTCATGACTCAGGCCGGGATCGAGAATTCTATCAAAGAACCA
GCGACCTGA

Translation (72 aa):
MDTRTPEVPCGDLLQNAAENLLLEVEEHFQALTTTLNLRMEEMGSRIEDLQRNVDDLMTQAGIENSIKEP
AT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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