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Report for CCDS50275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50275.1 Public Mus musculus 18 Dcp2 23 108 98 CCDS HistoryNCBI Gene:70640Re-query CCDS DB by CCDS ID:50275.1Re-query CCDS DB by GeneID:70640See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025350.9 ENSMUSP00000025350.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025350.9Link to Ensembl Protein Viewer:ENSMUSP00000025350.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025350Re-query CCDS DB by Protein ID:ENSMUSP00000025350
Original member Current member NCBI NM_027490.1 NP_081766.1 Accepted alive Link to Nucleotide Sequence:NM_027490.1Link to Protein Sequence:NP_081766.1Re-query CCDS DB by Nucleotide ID:NM_027490Re-query CCDS DB by Protein ID:NP_081766Link to BLAST:NP_081766.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081766.1 422 Q9CYC6 422 100% 0 0

Chromosomal Locations for CCDS 50275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44380634 44380686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44395873 44396024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44399624 44399751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44400317 44400415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44405210 44405362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44405457 44405569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44405653 44405760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44410183 44410318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44412516 44412626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44415377 44415428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44417566 44417729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGAGCCCAAACGCCTGGAGATTCCCGGCAGCGTCCTGGATGATCTCTGCAGCCGATTTATTTTGCATA
TTCCCAGTGAAGAAAGAGACAATGCGATCCGAGTGTGCTTCCAGATTGAACTTGCCCATTGGTTTTACTT
GGATTTCTACATGCAGAACACACCAGGATTACCTCAGTGCGGGATAAGAGACTTTGCCAAAGCTGTTTTC
AGTCACTGTCCATTTCTGCTGCCACAAGGTGAAGATGTGGAAAAGATTTTGGATGAATGGAAGGAATATA
AAATGGGAGTCCCGACTTACGGTGCAATTATTCTCGATGAGACACTGGAGAATGTACTGCTGGTTCAGGG
GTACCTGGCAAAGTCAGGCTGGGGATTCCCAAAAGGAAAAGTAAATAAAGAAGAGGCGCCTCATGACTGT
GCGGCGAGAGAGGTCTTCGAGGAAACTGGTTTTGATATAAAAGACTATATTTGTAAGGATGATTACATTG
AACTGCGAATCAATGACCAGCTTGCTCGCTTGTACATCATTCCAGGAGTCCCAAAAGACACAAAATTTAA
CCCCAAAACCAGAAGAGAAATTAGGAATATTGAGTGGTTCTCCATTGAGAAATTGCCCTGTCATAGAAAT
GACATGACTCCCAAGTCCAAGCTTGGCTTGGCACCTAATAAGTTTTTTATGGCCATTCCCTTTATCAGAC
CACTAAGGGACTGGCTGTCTCGAAGATTTGGAGATTCCTCGGACAGTGACAATGGGTTTTCCTCAGCTGG
TAGCACACCAGCTAGACCCACCGTGGAGAAATTGAGTCGAACAAAATTCCGCCACAGCCAGCAGCTGTTT
CCTGAAGGTTCCCCGAGTGACCAGTGGGTTAAGCACCGGCAGCCACTGCAGCAGAAGTCACACAGTAACC
ACGGGGAGGTGTCGGACCTTCTCAAAGCAAAGAATCAAAATATGAGAGGGAATGGCAGAAAACAGTATCA
AGACTCACCTAATCAAAAGAAGAGAGCGAACGGAGTCCATGGTCAGCCGGCAAAGCAGCAGAATCCCTTG
GTGAAATGTGAAAAGAAGCTGCATCCACGGAAACTTCAGGACAACTTCGAGACAGATGCCACATGTGACC
TGCCTTGTTCTGGTGAAGAGCCGTCGGTAGAACATGCTGAGGGACATTCTGTGGCATGCAACGGACATTG
CAAGTTCCCATTTTCATCCAGAGCCTTTCTGAGTTTCAAGTTTGACCAAAATGCTATAATGAAAATCTTG
GACCTTTGA

Translation (422 aa):
MEPKRLEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKAVF
SHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDC
AAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFSIEKLPCHRN
DMTPKSKLGLAPNKFFMAIPFIRPLRDWLSRRFGDSSDSDNGFSSAGSTPARPTVEKLSRTKFRHSQQLF
PEGSPSDQWVKHRQPLQQKSHSNHGEVSDLLKAKNQNMRGNGRKQYQDSPNQKKRANGVHGQPAKQQNPL
VKCEKKLHPRKLQDNFETDATCDLPCSGEEPSVEHAEGHSVACNGHCKFPFSSRAFLSFKFDQNAIMKIL
DL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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