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Report for CCDS50235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50235.1 Public Mus musculus 18 Nol4 23 108 98 CCDS HistoryNCBI Gene:319211Re-query CCDS DB by CCDS ID:50235.1Re-query CCDS DB by GeneID:319211See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081423.12 ENSMUSP00000080150.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081423.12Link to Ensembl Protein Viewer:ENSMUSP00000080150.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081423Re-query CCDS DB by Protein ID:ENSMUSP00000080150
Original member Current member NCBI NM_001161483.1 NP_001154955.1 Accepted alive Link to Nucleotide Sequence:NM_001161483.1Link to Protein Sequence:NP_001154955.1Re-query CCDS DB by Nucleotide ID:NM_001161483Re-query CCDS DB by Protein ID:NP_001154955Link to BLAST:NP_001154955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154955.1 564 P60954-2 564 100% 0 0

Chromosomal Locations for CCDS 50235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 22694941 22695134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22718979 22719156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22751927 22752040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22769744 22769935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22770681 22770860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22823287 22823570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22912582 22912714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22920815 22920927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22921846 22921957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22952161 22952310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23038558 23038602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGCATGAAAGGCTCTTCCAAGCACCATCTGGAGGACTCTCTCAGGATGGCGTAGGAGTTGATGAGAAGC
TGTCTTTACGGCGAGTGGCTGTGGTTGAAGATTTCTTTGACATCATCTATTCCATGCATGTGGAGACAGG
GCCGAATGGAGAGCAAATCCGGAAACACGCTGGGCAGAAGAGAACTTACAAAGCAATTTCAGAGAGCTAT
GCCTTCCTACCAAGAGAAGCGGTGACACGGTTTCTAATGAGCTGTTCCGAGTGCCAGAAAAGAATGCACT
TGAACCCAGATGGAACGGATCACAAAGATAATGGAAAGCCTCCTACACTGGTGACCAGCATGATCGACTA
CAACATGCCAATCACAATGGCGTACATGAAGCACATGAAACTGCAGCTTCTGAACTCACAGCAAGATGAG
GATGAAAGCTCAATAGAAAGTGACGAATTTGACATGAGTGATTCAACACGAATGTCAGCCGTGAACTCTG
ACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGATGACTC
TGCTGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTCAGGGGGAGCACATGGC
AGGGAGCCCGAGGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGA
GTGACAGCCCCAGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAAAA
CAAGTATAAGAATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGCGAGAGAAAATGGAAGCAAGTCT
CCAGCACACAGCTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTGATCGAGGTGCAGAGGATCTGT
CACTCAACAGGGGAGATGAAGATGAAGATGAACATGATGAGCATGAGGATTCGGAGAAGGTGAACGAGAC
AGATGGTGTGGAAGCTGAGAGGCTGAAAGCTTTCAATATGTTTGTCAGGCTGTTTGTAGATGAAAACTTG
GACCGAATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTCATGCAGGCGAC
AATTCCCTGAGTATCAAGAGCGTGCCAGAAAACGTATCCGTACTTACCTCAAGTCCTGCAGGCGGATGAA
AAGAAGTGGTTTTGAGATGTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGTATCTTG
GCTTCAGCCTGTGAAAGCGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGATAAAGCACAGGATGAAG
CTGCTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCAGG
CTCCCAGGAGGTATTGTACATCAATGGCAATGGGACCTACAGTTACCATAGTTACCGAGGGCTAGGAGGG
CTGCTAAGCCTGGATGACACTTCTAGTAGCGGACCCACAGATCTGAGCATGAAGAGGCAGCTGGCAACTG
GCTCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAGCTCAGTCCGACGGAAATCAATGCCGTGAGACA
GCTTGTCGCCGGTTATCGAGAATCGGCTGCATTTTTATTGCGTTCCGCAGATGAACTGGAAAATCTCATT
TTACAACAGAACTGA

Translation (564 aa):
MHERLFQAPSGGLSQDGVGVDEKLSLRRVAVVEDFFDIIYSMHVETGPNGEQIRKHAGQKRTYKAISESY
AFLPREAVTRFLMSCSECQKRMHLNPDGTDHKDNGKPPTLVTSMIDYNMPITMAYMKHMKLQLLNSQQDE
DESSIESDEFDMSDSTRMSAVNSDLSSNLEERMQSPQTVHGQQDDDSAAESSNGNETLGHSSAASGGAHG
REPEDSSSDGKTGLEQEEQPLNLSDSPSSAQLTSEFRIDDQGSDGKNKYKNLLISDLKMEREARENGSKS
PAHSYSSYDSGKNESVDRGAEDLSLNRGDEDEDEHDEHEDSEKVNETDGVEAERLKAFNMFVRLFVDENL
DRMVPISKQPKEKIQAIIDSCRRQFPEYQERARKRIRTYLKSCRRMKRSGFEMSRPIPSHLTSAVAESIL
ASACESESRNAAKRMRLDKAQDEAAPADKQCKPEAAQATYSTATVPGSQEVLYINGNGTYSYHSYRGLGG
LLSLDDTSSSGPTDLSMKRQLATGSGSSSSSTSRPQLSPTEINAVRQLVAGYRESAAFLLRSADELENLI
LQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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