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Report for CCDS50231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50231.1 Public Mus musculus 18 Dsg1a 23 108 98 CCDS HistoryNCBI Gene:13510Re-query CCDS DB by CCDS ID:50231.1Re-query CCDS DB by GeneID:13510See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077146.3 ENSMUSP00000076393.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077146.3Link to Ensembl Protein Viewer:ENSMUSP00000076393.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077146Re-query CCDS DB by Protein ID:ENSMUSP00000076393
Original member NCBI NM_010079.2 NP_034209.2 Updated not alive Link to Nucleotide Sequence:NM_010079.2Link to Protein Sequence:NP_034209.2Re-query CCDS DB by Nucleotide ID:NM_010079Re-query CCDS DB by Protein ID:NP_034209
Current member NCBI NM_010079.3 NP_034209.2 Accepted alive Link to Nucleotide Sequence:NM_010079.3Link to Protein Sequence:NP_034209.2Re-query CCDS DB by Nucleotide ID:NM_010079Re-query CCDS DB by Protein ID:NP_034209Link to BLAST:NP_034209.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034209.2 1057 Q61495 1057 100% 0 0

Chromosomal Locations for CCDS 50231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20311018 20311065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20320295 20320330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20320924 20321055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20322197 20322352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20323944 20324088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20326621 20326787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20328237 20328371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20328663 20328848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20331455 20331714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20332019 20332158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20333480 20333809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20335902 20336038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20336791 20336863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20338638 20338846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20340026 20341045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3174 nt):
ATGGACTGGCACTCCTTCAGGATAGCTGCCCTGCTGCTCACTTCCCTGGTGGTGCTTGAAGTTAACAGTG
AATTTCAAATCCAGGTAAGAGATCATAACGCCAAAAATGGTACCATCAAGTGGCATTCCATCAGAAGGCA
GAAACGAGAATGGATCAAGTTTGCTGCAGCCTGTCGCGAAGGTGAAGACAACTCAAAGAGAAACCCAATT
GCCAAAATTCATTCAGATTGTGCTGCAAATCAACCAGTGACATACCGCATCTCGGGAGTGGGAATTGACC
AGCCACCTTATGGAATCTTCATTATTAATCAAAAAACTGGTGAAATCAATATAACATCCATTGTTGATCG
TGAAGTCACCCCCTTTTTCATTATCTACTGCCGAGCACTGAATGCACAAGGTCAAGACTTGGAGAATCCA
CTGGAGCTTAGAGTTAGAGTGATGGATATAAATGACAACCCTCCTGTGTTTTCAATGACTACATTTCTAG
GACAAATAGAAGAAAATTCTAATGCAAACACACTGGTAATGAAACTCAATGCTACCGATGCCGATGAGCC
AAATAACTTGAACTCAATGATAGCCTTCAAGATCATAAGACAGGAGCCTTCTGACTCACCAATGTTCATC
ATCAACAGGAAAACTGGAGAAATCAGAACAATGAATAACTTTCTAGACAGAGAGCAATATAGCCAGTATT
CCCTTGTGGTGAGAGGCTCAGACCGGGACGGTGGAGCAGACGGCATGTCTGCAGAGAGCGAGTGCAGCAT
CACCATCCTGGATGTCAATGACAACATCCCATACTTGGAGCAGTCATCTTATGACATCACAATTGAAGAA
AATGCACTTCACTCACAGCTAGTGCAGATCAGAGTCATTGATTTGGATGAAGAATTCTCAGACAACTGGA
AGGCAATCATTTTCTTTATCTCTGGAAATGAGGGAAATTGGTTTGAAATAGAAATGAATGAAAGAACAAA
TGTAGGAACTCTGAAGGTTGTCAAGCCCCTAGATTATGAAGCCATGAAGAATCTACAGCTTAGTATTGGT
GTTCGGAATGTAGCTGAATTCCACCAGTCAATTATTTCTCAATACAGACTCACAGCAACTATGGTCACTG
TGACTGTGTTAAATGTCATCGAGGGCTCTGTGTTCCGTCCAGGTTCAAAGACATTTGTAGTAGACAGTAG
AATGGAAGCAAATCACAGAGTGGGAGAGTTTGTAGCTACAGACCTGGACACAGGTCGAGCTTCCACAAAT
GTTAGATATGAAATGGGAAATAACCCAGAGAACCTGCTGGTTGTTGACTCAAGAACAGGCATAATAACGT
TAAGAAACAGAGTTACTATGGAACAATACCAAAGGCTTAATGGGGAATATAAAGGAACAGTGCTATCAAT
AGATGATTCCCTTCAGAGGACCTGCACGGGGACAATCGTCATTGAACTTAGTGGCACTGGCTGGGTAACT
GGTTCAGAAAGTGGTGGCAGTTCCAGTGGCAGTGGCGATGATCGTGACCGAGTGACTAATGGATATCAAG
GCACTTCTTCCACTGAGAACCCACAACGCGTCACAGGATCATGGGGAGGCAGCGGCATCGATGGCACTCG
CCCTAACACTAACCCTTTCCAAGGGGATCCTGATGAAACCCTTGAGACCCCTCTCTATGGAGACAACGTT
CACTTCGGTCCTGCAGGCATCGGGCTGCTCATCATGGGGTTCCTAGTCTTAGGATTGGTTCCATTCCTGC
TGATCTGCTGTGATTGTGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTTCTGA
TGGAGCAATTCACACGTGGGCTGTAGAAGGGCCACAGCCTGAACCCCATGAAGGGATAACCACCATCTGT
GTGCCACAAATGCCACCTGGTAATGCCAATGTTATAGAATATATTGACAACTCAGGAGTTTATACAAATG
AATATTGTGGCAGAGAAATGCAAGATCTGGGAGGAGGAGAAAGAACCACAGGATTTGAACTAATGGATGG
AGTTAAAACATCAGCTGCACCTGAGATATGCCAAGAATATTCAGGAACATTAAGAAGAAATTCAATGAGA
GAATGTAGAGATGGGGGTCTCAACATGAATTTCATGGAAAGTTACTTCTGCCAGAAAGCCTATGCTTATG
CGGATGAAGATGAAGGACGTCCATCCAATGACTGTTTGCTCATCTATGACATCGAAGGTGTGGGTTCCCC
TGCAGGCTCCGTGGGCTGTTGCAGTTTCATTGGAGAAGATCTAGATGAGAGCTTCCTGGATACCTTGGGG
CCCAAGTTTAAGAAGTTGGCAGATATCAGCCTGGGAAAAGAAATAGACTCATACCCAGATTCTGATCCTT
CTTGGCCTCCTCAGAGCACTGAACCGATGTGTCCCCAGCATACAGAGCCCCTGGGTAGTGGACACCCACC
CATCTCCCCACATTTTGGCACGACCACAGTAATTTCTGAAAATGCCTACCACTCTGGACCTGGAGTACAG
CATCCTGTACCAATTCCTGATCCTCTGGGCTATGGCAATGTCACTGTGAGGGAGTCCTATACCACCTCTG
GCACTCTGAAACCCTCTGTCCACTTTCATGATAATCAGCAGGCTTCAAATGTGGTGGTGACAGAGAGGGT
GGTGGGCCCCATCTCTGGTGCTGATTTGCATGGCATGTTAGAGATACCTGACTTAAGAGGTGGAGCAAAT
GTTATAGTGACAGAAAGGGTAATAGCACCAGGCTCAAGTCTACCCACTTCTCTAACCATTCCTAACCCTC
AAGAGACCTCAAATGTAGTTGTGACAGAAAGAGTGATCCAACCAACCTCTGGCATGATAGGCAATCTGAG
CATGACCCCTGAATTATCAAGTGCCCACAACGTGATTGTGACAGAGAGAGTGGTTTCTGGTGCTGGTATG
AGTGAAATTGCAGGCACTGCCGGATTAGGGGGGGTTGGAGGCATAGGCAGCAGTGGCCTTGTTAGCACCA
CCATGGGTGCTTCTGGCACTGGGCTGAACATGGGAGGAACAGCCACTATTGGCCACATGAGGAGCTCCTC
TGACCATCACTTTAGTCAGACAGTTGGATCTGCCTCCCCCAGCATGGCTCGAAGTCGAATCACAAAGTAC
AATACGGTACAGTATAGCAAGTAG

Translation (1057 aa):
MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPI
AKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENP
LELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFI
INRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEE
NALHSQLVQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAMKNLQLSIG
VRNVAEFHQSIISQYRLTATMVTVTVLNVIEGSVFRPGSKTFVVDSRMEANHRVGEFVATDLDTGRASTN
VRYEMGNNPENLLVVDSRTGIITLRNRVTMEQYQRLNGEYKGTVLSIDDSLQRTCTGTIVIELSGTGWVT
GSESGGSSSGSGDDRDRVTNGYQGTSSTENPQRVTGSWGGSGIDGTRPNTNPFQGDPDETLETPLYGDNV
HFGPAGIGLLIMGFLVLGLVPFLLICCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPEPHEGITTIC
VPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMR
ECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDESFLDTLG
PKFKKLADISLGKEIDSYPDSDPSWPPQSTEPMCPQHTEPLGSGHPPISPHFGTTTVISENAYHSGPGVQ
HPVPIPDPLGYGNVTVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPDLRGGAN
VIVTERVIAPGSSLPTSLTIPNPQETSNVVVTERVIQPTSGMIGNLSMTPELSSAHNVIVTERVVSGAGM
SEIAGTAGLGGVGGIGSSGLVSTTMGASGTGLNMGGTATIGHMRSSSDHHFSQTVGSASPSMARSRITKY
NTVQYSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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