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Report for CCDS50196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50196.1 Public Mus musculus 17 Mta3 23 108 98 CCDS HistoryNCBI Gene:116871Re-query CCDS DB by CCDS ID:50196.1Re-query CCDS DB by GeneID:116871See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112352.9 ENSMUSP00000107971.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112352.9Link to Ensembl Protein Viewer:ENSMUSP00000107971.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112352Re-query CCDS DB by Protein ID:ENSMUSP00000107971
Original member Current member NCBI NM_001171052.1 NP_001164523.1 Accepted alive Link to Nucleotide Sequence:NM_001171052.1Link to Protein Sequence:NP_001164523.1Re-query CCDS DB by Nucleotide ID:NM_001171052Re-query CCDS DB by Protein ID:NP_001164523Link to BLAST:NP_001164523.1

Chromosomal Locations for CCDS 50196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83706258 83706285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83708399 83708466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83714614 83714707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83738329 83738455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83753854 83753917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83755559 83755676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83762911 83763013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83766507 83766606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83775582 83775770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83781902 83781976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83784277 83784335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83788921 83789042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83791653 83791801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83792542 83792764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83800050 83800136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83804451 83804605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGGCGGCCAACATGTACCGGGTCGGAGACTACGTTTATTTTGAGAATTCCTCCAGCAACCCGTACCTCA
TCAGACGGATAGAGGAGCTCAACAAGACTGCAAGTGGCAATGTGGAAGCAAAAGTCGTCTGCTTTTACAG
AAGACGGGACATCTCCAACACGCTTATCATGCTCGCCGACAAGCATGCTAAAGAAACTGAGGAGGAGTCG
GAGACGCCAGTTGAGGCCGACTTGACGGAGAAGCAGAAGCACCAGCTGAAACACAGGGAGCTCTTTCTGT
CGCGCCAGTACGAGTCACTGCCTGCGACACATATCAGGGGGAAGTGCAGCGTGGCCCTGCTGAATGAGAC
AGAATCCGTGTTGTCATACCTTGACAAGGAGGATACCTTCTTCTACTCACTGGTATACGACCCTTCAGTG
AAAACATTATTGGCTGACAAAGGTGAAATCAGAGTGGGCCCAAAGTACCAAGCTGACATTCCAGACATGC
TACCAGAAGGAGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCC
ACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCGTGCCGTGGGAACATTTGCCCGAGCCCTG
GACTGCAGCAGCTCCGTGAGGCAACCCAGCCTTCACATGAGTGCAGCCGCAGCCTCCCGAGACATCACCT
TGTTTCATGCCATGGACACACTGTACAGGCACGGCTATGACCTCAGCAGCGCCATCAGTGTGCTGGTGCC
GCTCGGAGGGCCAGTCCTCTGCAGGGACGAGATGGAGGAGTGGTCGGCCTCTGAAGCCTGCCTATTCGAA
GAAGCACTGGAAAAATACGGCAAAGATTTCAACGACATTCGTCAGGACTTTCTCCCGTGGAAATCCTTGA
CTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTGCAGCAGAAGCGCCTAAAGGC
CGCAGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCGACTTACAAACCAAATCCCAACCAAATCTCC
AGCAGCAACGGCAAGGCTGGCACTGTGAATGGAGCTGTGGGGACCCAGTTTCAGCCCCAGAGCGCCCTCC
TAGGGCGAGCCTGCGAGAGCTGCTACGCCACACAGTCTCATCAGTGGTATTCCTGGGGCCCACCTAACAT
GCAGTGTAGACTCTGCGCGACCTGTTGGCTGTATTGGAAAAAGTATGGAGGTCTGAAAATGCCTACCCAG
TCAGACGAAGAGAAGTCTCCCAGCCCGACTGCAGAGGACCCGCGCGCAAGAAGCCACATGTCCCGGCAGG
CCTTGCAGGGCATGCCGGTCCGGAACACCGGAAGCCCCAAGTCTGCAGTGAAGACCCGCCAAGCTTTCTT
CCTTCGTACTACGTATTTCACAAAAATTGCTCGTCAGGTCTGCAAAAGCACCCTGCGGCTGCGGCAGGCA
GCGAGACGGCCGTTTGTTGCTATTAATTATGCTGCCATTAGGGCAGAATATGCAGACAGACATGCCGAAC
TTTCTGGAAGCCCACTGAAAAGCAGAAGCACCAGGAAACCTTTGTCGTGTATCATTGGGTATTTAGAGAT
CCATCCCGCAAAGAAACCTAATGTAATTCGGTCTCCACCAAGCCTGCAAACTCCAGCTACCAAGAGGATG
CTCGCCGCTCCGAATCACACATCTCTGAGCATTCTGGGGAAAAGAAACTACAGCCATCACAATGGTCTAG
ATGGTACGTAA

Translation (586 aa):
MAANMYRVGDYVYFENSSSNPYLIRRIEELNKTASGNVEAKVVCFYRRRDISNTLIMLADKHAKETEEES
ETPVEADLTEKQKHQLKHRELFLSRQYESLPATHIRGKCSVALLNETESVLSYLDKEDTFFYSLVYDPSV
KTLLADKGEIRVGPKYQADIPDMLPEGDSDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARAL
DCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHGYDLSSAISVLVPLGGPVLCRDEMEEWSASEACLFE
EALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQVYIPTYKPNPNQIS
SSNGKAGTVNGAVGTQFQPQSALLGRACESCYATQSHQWYSWGPPNMQCRLCATCWLYWKKYGGLKMPTQ
SDEEKSPSPTAEDPRARSHMSRQALQGMPVRNTGSPKSAVKTRQAFFLRTTYFTKIARQVCKSTLRLRQA
ARRPFVAINYAAIRAEYADRHAELSGSPLKSRSTRKPLSCIIGYLEIHPAKKPNVIRSPPSLQTPATKRM
LAAPNHTSLSILGKRNYSHHNGLDGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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