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Report for CCDS50149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50149.1 Public Mus musculus 17 Shd 23 108 98 CCDS HistoryNCBI Gene:20420Re-query CCDS DB by CCDS ID:50149.1Re-query CCDS DB by GeneID:20420See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223629.1 ENSMUSP00000153605.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223629.1Link to Ensembl Protein Viewer:ENSMUSP00000153605.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223629Re-query CCDS DB by Protein ID:ENSMUSP00000153605
Original member NCBI NM_001159523.1 NP_001152995.1 Updated not alive Link to Nucleotide Sequence:NM_001159523.1Link to Protein Sequence:NP_001152995.1Re-query CCDS DB by Nucleotide ID:NM_001159523Re-query CCDS DB by Protein ID:NP_001152995
Current member NCBI NM_001159523.2 NP_001152995.1 Accepted alive Link to Nucleotide Sequence:NM_001159523.2Link to Protein Sequence:NP_001152995.1Re-query CCDS DB by Nucleotide ID:NM_001159523Re-query CCDS DB by Protein ID:NP_001152995Link to BLAST:NP_001152995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152995.1 344 O88834-2 344 100% 0 0

Chromosomal Locations for CCDS 50149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55971439 55971717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55972785 55972893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55972977 55973153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55973888 55973996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55974234 55974353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55976164 55976404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGCCAAGTGGCTCCGAGACTATCTGAACTTGGGCAGCCGGAGGCCGCCTCCGCAGCCGCCCACCCCCG
ACTACACCGAGAGCGACATCCTGCGGGCCTACCGCGAACAGAAGGACCTGGACTTCGAGGACCCCTATGA
GGATTCCAATGGCCGCGCTGAGCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCAC
CGGCTGATCAAGGTGGAGGCTGCAGACATGGCCAGAGCCAAGGCTCTGCTGGGGAGCCCGGGGGAAGAGC
AGCCGGAAGCAGAAACTGAGTACTCAGACCCTTTTGATGCCCAGCCTCAGCCACCAGCCCCCAACAGTGG
GTACATGGAGCCCTATGATGCCCGGAGCGTCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGCTTTACGAT
ACTCCATATGAGGAGCAGGCTACGAAACCAGAAGATGGAGGGTCTTCGGGCCAGAGCCGGAGGCCCCTGG
AGGATGAGAGGCCAGCAGATGAATACGACCAGCCTTGGGAGTGGAAGAAGGATCACATCTCCAGGGCTTT
CGCAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAG
CCTGCGGAGCGTGTGGATACAGCCCTTGCCCTGGAGAAGCAGCCGTGGTTTCACGGCCCCCTGAGCCGAG
CAGAGGCCGAGAACCTTCTGTCCCTCTGCAAGGAAGGCAGCTACCTCGTTCGGCTCAGCGAGACCAGGGC
TCAGGACTGCATTCTGTCTCTCAGAAGCAACCAGGGTTCCATGCACCTGAAATTCGCAAGGACCCGGGAG
AACCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCCTGCATTACAGTG
CCCGCCCACTGCCCGTGCAAGGGGCAGAGCACCTGGCCCTGCTCTATCCTGTCACCAGCAGCCAGAGCTC
TCAAGGACCCTGCACATTGGCTGCTAAGCCAGAGAGGGGACAAGGGGACCCATGA

Translation (344 aa):
MAKWLRDYLNLGSRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDSNGRAEPEVTGSGDPKYNSPRH
RLIKVEAADMARAKALLGSPGEEQPEAETEYSDPFDAQPQPPAPNSGYMEPYDARSVSSEQPSRAVQLYD
TPYEEQATKPEDGGSSGQSRRPLEDERPADEYDQPWEWKKDHISRAFAVQFDGPDWERTPCSTKEPWRPQ
PAERVDTALALEKQPWFHGPLSRAEAENLLSLCKEGSYLVRLSETRAQDCILSLRSNQGSMHLKFARTRE
NQVVLGQHSGPFPSIPELVLHYSARPLPVQGAEHLALLYPVTSSQSSQGPCTLAAKPERGQGDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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