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Report for CCDS50146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50146.1 Reviewed, update pending Mus musculus 17 Vmn2r118 23 108 98 CCDS HistoryNCBI Gene:383258Re-query CCDS DB by CCDS ID:50146.1Re-query CCDS DB by GeneID:383258See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 50146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168440.2 ENSMUSP00000131128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168440.2Link to Ensembl Protein Viewer:ENSMUSP00000131128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168440Re-query CCDS DB by Protein ID:ENSMUSP00000131128
Original member NCBI NM_001104582.1 NP_001098052.1 Removed not alive Link to Nucleotide Sequence:NM_001104582.1Link to Protein Sequence:NP_001098052.1Re-query CCDS DB by Nucleotide ID:NM_001104582Re-query CCDS DB by Protein ID:NP_001098052Link to BLAST:NP_001098052.1
Current member NCBI NM_001385216.1 NP_001372145.1 Pending alive Link to Nucleotide Sequence:NM_001385216.1Link to Protein Sequence:NP_001372145.1Re-query CCDS DB by Nucleotide ID:NM_001385216Re-query CCDS DB by Protein ID:NP_001372145Link to BLAST:NP_001372145.1

Chromosomal Locations for CCDS 50146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55592341 55593245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55607988 55608111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55608416 55608643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55610206 55611012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55611393 55611690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55624473 55624672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGATGTTCACTTCAATTTTTATAGTTTTGCTCCTGAAGCTCCCTCTTCTTCTGTGCAATTCAGCTGAGA
ACATGTGCTTCTGGAGAGTAAAACTCAATGAAAACTGCGATGGTGACTTGCCCCAGGACTGTGCTTTTCT
CCTTTACACACAAGTGGACCCTGCACCAAAAGACTTTTTAAAGTATCTCTTTAAATCGTGTTTGCCTTCC
AAAATACACCAGTATCTTCTGTCACTGTATTTTGCAATGGAGGAGATAAACAGTAACCCCTACCTTTTAC
CCAATGTGTCTCTGGGAATTGAGTATTTTAAAGGCAAATGCAATGGTTATTTATCATTATTTACTAATCT
AAATATAATGACAAAGTATTATCACACTTTTCCTAATTACATCTGTGATCCCGGTGCATGTGAAATAGCA
CTTACAGGTCCACTGTGGATATCATCTGCACAAGTGGCAACAATTCTTCAGCTCAAGTTCATCCCACAGG
TAAGACAGATTACCTATGGACCATTCTACCCTCTCCTGAGTGACCAGAGCAAGTTTCCTAATCTGCATCA
GATTGCCCCCAAAAACAGATTCCTGCCTGAAGCCATAGTATCCTTGCTGTTCCATTTCAGCTGGATATGG
GTAGGACTAGTCATCCAAGATGATGACCAAGGTATTCAATTTCTCTTAGATATAAAAGAAGAAATGCAAA
GAAATGGAGTCTGTTTAGCCTTTGTGAATGTGATTCCACAGAACATGCATTTATTTACAACAAGGGCTGA
GAAATATTACAATCAAATAATTACATCTTCAGCAAATGTTGTTATACTTTATGGAGAACTGAATACTGCT
TTAGAAGTGAGCTTTAAACATTGGAAATATTTAGGCACACAGAAAATCTGGTTCACCACCTCACAATGGG
ATGCCATCACAAGGGAGAAAGACTTCAGCCTTACTTCATTTTATGGGACTCTCACTATTTCACAATATCA
TGGAGATGTTTCAACTTTAAATAATTTTTTTCAGGGAGCGAATCTTTCTAAGGACACACATTATTTTTCT
TCTGAAAGACTTGGGTGGATGTACTTTAACTGTTCAATATTAAAATCTAACTGTAAAACACCAAACCAGT
GCACATCCAGCAACTTATTGGAATGGTTACCACGGCACAGTTTTGACATGGCCATGAATGATGAGAGTTA
CAATATATACAATGCTATATATGCTGTGGCTCATGCTCTCCATGAAATGGTCCTTCAAAAAATAGATTTT
CAGCAACTGGAAAATGTGACCCAACTAATGCAGGAGTGCGTGCAGATCCATGCATTCTTGGAAAACATGC
AGTTTTTGAATCCTATTGGAGATGTAGTGATCATTAATCAGCAAGCAAAAACAGATGCAGAGTATGAGAT
CTATATGATTTGGAATTTTCCACAAGGGCTTGGAGTGAAGGTGAAAATAGGACGATTTTATTCATATTTC
CTACATGATCAAAAATTGTACTTATATGAGGACATGATCCAATGGGCCTCAGGATATAGCCAGATACCAC
CTTCTGTATGCAGTGTGAGCTGTGCTCCTGGATTTAAGAAATTCTACCTAGAAGAAAAACCATCCTGCTG
TTTTGATTGTTCTCCTTGCCCTGAAAATGAGATTTCAAATGCCACAGATCTAACACAATGTGTGAAGTGT
CCAGATGGTCAATATGCCAACATAGAGAGAAATCACTGCTTCCCAAAGGTTGTGACATATCTGGCTTATG
CAGACCCATTAGGGATTGTATTGGCTTGCATGGCCTTATTTTTATCCATGTTGTCAGTTCTTGTTCTAGG
AATCTTTGTGAAAAACCAATACACTCCCATTGTGAAAGCTAATAACCGCACTCTCAGCTACATCCTGCTC
ATTTCTCTCACACTTTGTTTTCTCTGCTCATTGTTCTTCATCGGACATCCTAGCACAGCCAGATGTCTCC
TGCAGCAGATCACTTTTGGAATTCTGTTCACTGTGGCCGTGTCTGCGGTCTTGGCTAAAACAATTACTGT
ACTTCTGGCCTTTAGCATTACTATTCCAGGAAGAAGAGTTAAATGGCTTCTGCTATTTGGGACACACAAA
GTCATCATTCCAATCTGTTCCCTTTTTCAACTAATTATCTGTGGATTCTGGTTGGGACTATCTCCTCCTT
TTGTAGAGAGAGATACTCACACTGAACATGGCCACATCATCATTATGTGCAACAAGGGCTCACTTATAGC
CTTCTACTCTGTGCTGGGATACCTTGGCTGTCTGGCACTAGCAAGCTTCATTATGGCTTTCTTGGTTAGA
AATCTGCCTGACACTTTCAATGAAGCCAAGTTCCTAACATTCAGCATGCTTGTGTTTTGCAGTGTTTGGG
TCACCTTCCTCCCTGTCCACCACAGCACCAAAGGGAAGGCCATGGTGGCTGTGGAGGTATTCTCCATCTT
GGCCTCGAGTGCAGGGCTTCTAGGTTGCATCTTTATCCCCAAGTGCTATATTATTGTGTTAAGACCAGAT
AGAAATTTTATACAAAGGTCAAAGGGTAAAAATCATTCCTGA

Translation (853 aa):
MMFTSIFIVLLLKLPLLLCNSAENMCFWRVKLNENCDGDLPQDCAFLLYTQVDPAPKDFLKYLFKSCLPS
KIHQYLLSLYFAMEEINSNPYLLPNVSLGIEYFKGKCNGYLSLFTNLNIMTKYYHTFPNYICDPGACEIA
LTGPLWISSAQVATILQLKFIPQVRQITYGPFYPLLSDQSKFPNLHQIAPKNRFLPEAIVSLLFHFSWIW
VGLVIQDDDQGIQFLLDIKEEMQRNGVCLAFVNVIPQNMHLFTTRAEKYYNQIITSSANVVILYGELNTA
LEVSFKHWKYLGTQKIWFTTSQWDAITREKDFSLTSFYGTLTISQYHGDVSTLNNFFQGANLSKDTHYFS
SERLGWMYFNCSILKSNCKTPNQCTSSNLLEWLPRHSFDMAMNDESYNIYNAIYAVAHALHEMVLQKIDF
QQLENVTQLMQECVQIHAFLENMQFLNPIGDVVIINQQAKTDAEYEIYMIWNFPQGLGVKVKIGRFYSYF
LHDQKLYLYEDMIQWASGYSQIPPSVCSVSCAPGFKKFYLEEKPSCCFDCSPCPENEISNATDLTQCVKC
PDGQYANIERNHCFPKVVTYLAYADPLGIVLACMALFLSMLSVLVLGIFVKNQYTPIVKANNRTLSYILL
ISLTLCFLCSLFFIGHPSTARCLLQQITFGILFTVAVSAVLAKTITVLLAFSITIPGRRVKWLLLFGTHK
VIIPICSLFQLIICGFWLGLSPPFVERDTHTEHGHIIIMCNKGSLIAFYSVLGYLGCLALASFIMAFLVR
NLPDTFNEAKFLTFSMLVFCSVWVTFLPVHHSTKGKAMVAVEVFSILASSAGLLGCIFIPKCYIIVLRPD
RNFIQRSKGKNHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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