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Report for CCDS50015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50015.1 Public Mus musculus 17 Traf7 23 108 98 CCDS HistoryNCBI Gene:224619Re-query CCDS DB by CCDS ID:50015.1Re-query CCDS DB by GeneID:224619See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070777.12 ENSMUSP00000069334.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070777.12Link to Ensembl Protein Viewer:ENSMUSP00000069334.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070777Re-query CCDS DB by Protein ID:ENSMUSP00000069334
Original member Current member EBI ENSMUST00000176353.7 ENSMUSP00000135267.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176353.7Link to Ensembl Protein Viewer:ENSMUSP00000135267.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176353Re-query CCDS DB by Protein ID:ENSMUSP00000135267
Original member NCBI NM_001172114.1 NP_001165585.1 Updated not alive Link to Nucleotide Sequence:NM_001172114.1Link to Protein Sequence:NP_001165585.1Re-query CCDS DB by Nucleotide ID:NM_001172114Re-query CCDS DB by Protein ID:NP_001165585
Current member NCBI NM_001172114.2 NP_001165585.1 Accepted alive Link to Nucleotide Sequence:NM_001172114.2Link to Protein Sequence:NP_001165585.1Re-query CCDS DB by Nucleotide ID:NM_001172114Re-query CCDS DB by Protein ID:NP_001165585Link to BLAST:NP_001165585.1

Chromosomal Locations for CCDS 50015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24509344 24509358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24509532 24509651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24509736 24509867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24509956 24510075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24510249 24510371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24510456 24510572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24510659 24510698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24511315 24511397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24511572 24511699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24511776 24511824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24512013 24512086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24512169 24512386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24512956 24513084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24513193 24513376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24513899 24513932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24514125 24514217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24516505 24516599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24518742 24518799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24519131 24519208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGAGCTCAGCCAAGAGTGCCCGCTACGACCGCTTCTCCGGGGGACCTGCCAACCTCCCCTCCTCAGACA
GCAGTGGGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACTACCATCACCAAAGCAGC
TGATGGGACTGGCACATACAAACAGCATCGCAGGACACCTTCCTCCTCTAGCACCCTTGCCTATTCGCCA
CGGGATGAGGAGGACGGCATGGAGCCGTTGGTATTTGCCGAGCAGCCCTCGGTAAAGCTGTGTTGCCAGC
TGTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACATGTGGGCACACCTTCTGCAGACGATGCGCCTT
GAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTAGTGGTGAACAACATTGCAGTCGCTGAG
CAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCACGCAGCGGGCACTGGAAAGCCTGGGGTCT
TTGAGGTAGACCCGAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTG
TGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAATCTCGAGGCC
CACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTGCACATTTATTGGGAATCAGGACACCT
ATGAGACACACTTAGAAACATGCCGCTTCGAGGGCCTGAAGGAGTTCCTGCAGCAGACCGATGACCGCTT
CCACGAGATGCATGTGGCACTGGCCCAAAAGGACCAGGAGATTGCCTTCCTGCGTTCCATGCTGGGCAAA
CTCTCAGAGAAGATTGACCAGCTAGAGAAGAGCCTTGAGCTTAAGTTTGACGTACTGGATGAGAACCAGA
GCAAGCTCAGCGAGGACCTCATGGAGTTCCGGAGGGACGCGTCCATGCTGAATGATGAGCTGTCTCACAT
CAATGCACGGCTGAACATGGGTATCCTTGGATCCTATGACCCTCAGCAGATCTTCAAGTGCAAAGGGACC
TTTGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTATTCCATGGGTGACCTGCTCTTCAGTGGCT
CTTCTGACAAGACAATCAAGGTATGGGACACTTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCA
TGATGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATC
ATTGTGTGGGACATCCAGAACCTACAGAAGGTGAATACTATCCGGGCCCACGACAACCCTGTATGCACAC
TGGTGTCTTCCCACAACATGCTCTTCAGTGGCTCCCTGAAAGCCATCAAGGTTTGGGACATCGTGGGCAC
TGAGCTAAAGTTGAAGAAAGAACTCACAGGCCTCAACCACTGGGTGCGGGCCCTGGTGGCAGCACAGAGC
TATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCC
TGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGA
GAACCTCATTCATGTGTGGGACATTGAATCCAAAGAGCAGGTTCGGACCCTCACAGGTCACGTGGGCACA
GTGTATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGTGCATCCTATGACCGGTCCC
TCAGGGTCTGGAGTATGGACAACATGATCTGCACACAGACTCTGCTGCGCCATCAGGGCAGTGTAACTGC
ACTGGCTGTTTCCCGGGGCCGGCTCTTCTCAGGGGCTGTGGATAGCACCGTGAAGGTCTGGACATGCTAA

Translation (629 aa):
MSSAKSARYDRFSGGPANLPSSDSSGTRMETTFGPTFSTVTTITKAADGTGTYKQHRRTPSSSSTLAYSP
RDEEDGMEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAE
QIGELFIHCRHGCHAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEA
HLKECEHIKCPHSKCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGK
LSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGT
FVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTI
IVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQS
YLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGT
VYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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