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Report for CCDS49987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49987.1 Public Mus musculus 17 Vmn2r109 23 108 98 CCDS HistoryNCBI Gene:627814Re-query CCDS DB by CCDS ID:49987.1Re-query CCDS DB by GeneID:627814See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167093.2 ENSMUSP00000132641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167093.2Link to Ensembl Protein Viewer:ENSMUSP00000132641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167093Re-query CCDS DB by Protein ID:ENSMUSP00000132641
Original member Current member NCBI NM_001104571.1 NP_001098041.1 Accepted alive Link to Nucleotide Sequence:NM_001104571.1Link to Protein Sequence:NP_001098041.1Re-query CCDS DB by Nucleotide ID:NM_001104571Re-query CCDS DB by Protein ID:NP_001098041Link to BLAST:NP_001098041.1

Chromosomal Locations for CCDS 49987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20540517 20541445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20550077 20550200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20552834 20553049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20553784 20554575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20554948 20555242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20564536 20564756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGTTCTACTGGATTTTTATTTCCTGGTTCTTACAGATTCCCAAACTTGTCTCTGCCTTTATAACTATGA
ATATCAGTCTGTGCTTTTACAAAACCCCTGAAGATTTTCACCATGATGGAGATGTGATGATTGGTGCATT
TTTTCCTATTCATACTTACTACACTGAGTACAAAATTCCACATCCATTTCTTCCATACCAATATATGGAC
AATTATTTGCTGTATAATTTTAAGAACTACCAGTATATTCTGGCTTTGGTATTTGCTATTGAGGAGATCA
ATGGGAACCCTAGTCTTTTACCCAACATATCTCTTGGATTTGATTTCTACAATGTCAGATTCACTGAGAA
GGAAACTCTCATGAATGCCTGTTTTTGGCTCATATCTCAAGGGCAGAAAAAGATTTTACCAAATTACAAT
TGTGCCAAAAGAAATTTTACTGCTGCCCTCACAGGAACATCATGGACAACATCTGCCCAAATTGGAACAT
TACTTCAACTCTTTAAATTTCCTCAGCTTTCTTTTGGACCTTATGATCCCATCCTGAGTGACCGTGGTCA
ATATTCTTCGCTCTACCAGATGGCCCCCAAGTACACATTAATTCCACTTGGCATTGTATCTTTGATGGTT
CATTTTAGGTGGTCCTGGGTTGGTCTCATACTCCCAGATGATCACAAAGGAAATATAATTTTATCTGAGT
TCAGAGAAGATATGGATAGAAAAGGCATCTGCATAGCTTTTGTGAAAATGATCCCTGACACGTGGGCTTC
ATATATTAACAAATTCTGGGAAAATATGGATGAGACAAATGTCATAATTATTTATGGTGACATTGATTCT
CTCATAGGTCTAATGAGAAATATTGGTGAAAGATTGTTGACAGGGAAAGTCTGGGTCATGAACATTGAAC
CTTATATTACTGACTATGCTGATTATTTCATGTTTGACTCATTCCATGGTAGCCTAATTTTTACTTACCA
TTATAGAGAAAGTTTTGAGCTTACTAAGTTTATTCAAACAGTTAATCCTTACAAATACCCAGAAGACATT
TATCTTCCTAAGTTATGGCATTTGTTCTTCAAGTGCTCATTTTCTGATATTAATTGTCAACTGTTGGCTG
ACTGTCACTCCAATGCTTCTCTGGATATGTTACCTAGTCATATATTGGACATGACAATCAGTGAAGAAAG
CAACAATATCTATAATGCTGTGTATGCTGTGGCTCATAGTCTCCACCAGATAACTCTTCAACAAGAACAA
ATACAAGCACATGAAAATGATAAAATGATGGCCTTCTTCCCCTGGCAGCTTAACATTTTCCTGAAGGACA
TTGATGAGAGAAACAATATGAATTCAGGTGGGAGACAAAAATTAAATGCAGAATATGACATTCTTAACCT
TTGGAATTTACCAAAGGGTCTTGGACGAAAGGTGAAAATAGGATCCTTCTCAGCAAATGCTCCCGAGGGC
CAACAGTTGTCCTTATCTGAGCATATGATACAATGGGCAGGAGGATTTTCAGAGATCCCTCAGGCTGTGT
GCAGTAAGAGCTGTGAGCCTGGTTTCAGAAAAGTAACCCTGGAGGGCAAGGCCATCTGCTGCTACAATTG
CACTCCTTGTGCAGACAATGAAATTTCTAATGAGACAGATGCGGACCAGTGTATAAAGTGTCCAGAGAGT
CATTATGCAAGTATAGAGAAGAACCGCTGCTTCCAGAAAGCCTTGAGCTTTCTGTCCTACAAAGACCCGT
TGGGGGTGACACTAGCCAACATATCTTTGTGCTTATCTGCACTCACAGCCTTTGTAATTGGGGTCTTTGT
GAAATACAGAGACACTCCCATTGTGAAAGCCAATAATAGAGGTCTCAGTTACACTTTGCTCATCACAATC
ACCTTCTGTTTACTCTGTTCTTTGAATTTCATTGGTCAACCCAATACAGCCTCCTGCATCCTTCAGCAGA
CCATATTTGGAGTTTCATTCACTGTGGCTCTAGCTACCGTGTTGGCCAAAGCTATCACTGTGGTCATTGC
CTTCAAGGCCACCTTTCCAGGGAGAATGGTGAGGTGGTTAATGACCTCAAGAGCTCCAAACTATATAATT
CCTATTTGTACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACGTCTCCTCCATTTATTGACC
AAGATGTTCATGCTGAACATGGACAAATCCTACTGTTTTGCAACAAGGGATCATCTGTTGCCTTCCACTG
TGTTCTGGGATACCTCTGCTCCTTGGCTCTTGGGGGTTACACCATGGCATTCCTATCTAGAAATCTGCCT
GATACATTCAATGAATCCAAATTTCTGTCATTCAGCATGCTGGTGTTCTTCTGTGTCTGGGTCACCTTTC
TTCCTGTCTACCATAGCACTAAAGGAAAGGTCATGGTGGCTATGGAAGTCTTCTCTATCTTAGCTTCCAG
TGCAGCCCTCCTTGGCTTCATATTTGCTCCTAAGTGTTACATTATCTTGTTGAGACCAGAGAAGAATTCA
TTTCATCATATCAGGGACAAAACACATTCTAGAAGGAATAAGTCTCTTAAAATATAA

Translation (858 aa):
MFYWIFISWFLQIPKLVSAFITMNISLCFYKTPEDFHHDGDVMIGAFFPIHTYYTEYKIPHPFLPYQYMD
NYLLYNFKNYQYILALVFAIEEINGNPSLLPNISLGFDFYNVRFTEKETLMNACFWLISQGQKKILPNYN
CAKRNFTAALTGTSWTTSAQIGTLLQLFKFPQLSFGPYDPILSDRGQYSSLYQMAPKYTLIPLGIVSLMV
HFRWSWVGLILPDDHKGNIILSEFREDMDRKGICIAFVKMIPDTWASYINKFWENMDETNVIIIYGDIDS
LIGLMRNIGERLLTGKVWVMNIEPYITDYADYFMFDSFHGSLIFTYHYRESFELTKFIQTVNPYKYPEDI
YLPKLWHLFFKCSFSDINCQLLADCHSNASLDMLPSHILDMTISEESNNIYNAVYAVAHSLHQITLQQEQ
IQAHENDKMMAFFPWQLNIFLKDIDERNNMNSGGRQKLNAEYDILNLWNLPKGLGRKVKIGSFSANAPEG
QQLSLSEHMIQWAGGFSEIPQAVCSKSCEPGFRKVTLEGKAICCYNCTPCADNEISNETDADQCIKCPES
HYASIEKNRCFQKALSFLSYKDPLGVTLANISLCLSALTAFVIGVFVKYRDTPIVKANNRGLSYTLLITI
TFCLLCSLNFIGQPNTASCILQQTIFGVSFTVALATVLAKAITVVIAFKATFPGRMVRWLMTSRAPNYII
PICTLIQLLLCGIWMATSPPFIDQDVHAEHGQILLFCNKGSSVAFHCVLGYLCSLALGGYTMAFLSRNLP
DTFNESKFLSFSMLVFFCVWVTFLPVYHSTKGKVMVAMEVFSILASSAALLGFIFAPKCYIILLRPEKNS
FHHIRDKTHSRRNKSLKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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