NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49984.1 Public Mus musculus 17 Vmn2r107 23 108 98 CCDS HistoryNCBI Gene:22312Re-query CCDS DB by CCDS ID:49984.1Re-query CCDS DB by GeneID:22312See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042090.7 ENSMUSP00000048706.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042090.7Link to Ensembl Protein Viewer:ENSMUSP00000048706.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042090Re-query CCDS DB by Protein ID:ENSMUSP00000048706
Original member Current member NCBI NM_001104569.1 NP_001098039.1 Accepted alive Link to Nucleotide Sequence:NM_001104569.1Link to Protein Sequence:NP_001098039.1Re-query CCDS DB by Nucleotide ID:NM_001104569Re-query CCDS DB by Protein ID:NP_001098039Link to BLAST:NP_001098039.1

Chromosomal Locations for CCDS 49984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20345425 20345645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20355631 20355925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20356258 20357049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20357739 20357951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20360324 20360447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20374832 20375772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGTTCTCCTGGATTTTTATCTTCTTGCTCTTGCAAATTCCCAAATTTGTCTCTTCTGATTTAAAGTTTA
AT
GTCAATAGATGTTATTTCGAAATCACTGAAGAGTTTCACCATGAAGGAGATGTTATGATTGGTGCCTT
T
TTCCCTGTTCATACTTTCTACACTGAAAAGAAAAGGCCTCATTCAACTATACCATACCAATATTTGGAC
GGT
TATATACAGTATAACTTTAAGAACTACCAATATATTCTGGCTCTGCTATTTGCCATTGAGGAGATCA
AT
GGGAATCCCAATCTTTTACCCAACATATCTCTTGGATTTGATTTCTACAATGTCAGATTCACTGAAAA
G
GAAACACTTATGAATACTGTTATTTGGCTCACAGCTCATGTGCAGAGAAAGGTTTTACCTAATTACAAT
TGT
AAAAAGAGTAATTTCACTGCTGCAATCACAGGAACATCATGGATAACTTCTGCCCAAATTGGGACAT
TG
CTTCAACTCTTTAAATTTCCACAGATTACTTTTGGACCTTATGATCCTTTCTTGAGTGACCGTGGTCA
G
TATCCTTCTCTCTACCAGATGGCTCCCAAGGACACATCTCTTTCACTTGCCATTGTTTCTTTGATGGTT
CAT
TTTAGGTGGTCTTGGGTTGGTCTAATTCTCCCAGATGACCACAAAGGAAATAAAATACTATCAGATT
TT
AGAAAGGAGATGGAGAGAAAAAGAATCTGTACGGCTTTTGTAAAAATGATTCCTGCCACATGGACTTC
A
TCTTTTGTCAAATTCTGGGAAAATATGGATGACACCAACATAATAATTATTTATGGTGACATTGATTCT
CTA
GAAGGTCTAATGCGAAATATTGGGCAAAGGTTATTGACATGGCATGTCTGGGTCATGAACATTGAAC
CC
CATATTATTGAATATGATAATTATTTCATGTTAGATTCATTCCATGGAAGTTTAATTTTTAAGCACAA
T
TATAGAGAGAATTTTGAGTTTACCAAATTTATTCGAACAGTTAATCCTAAAAAATACCCAGAAGACATT
TAT
CTCCCTAAGATGTGGTATTTGTTCTTCATGTGCTCATTTTCTGATATTAATTGTCAAGTTTTGGACA
GC
TGTCAAACAAATGCTTCTTTGGATATGTTACCTAGTCAGATATTTGATGTGGTCATGAGTGAAGAGAG
C
ACAAGTATTTACAATGCTGTGTACGCTGTGGCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAA
ACA
CAACCGTGTGAAAATGAAGAAGGGATGGAGTTCTTTCCATGGCAGCTTAATACTTTCCTGAAGGATA
TT
GAGGTGAGAGTCAACAGTTTAGACTGGAGACAGAGAATAGATGCTGAATATGACATTCTTAACCTCTG
G
AATTTACCAAAGGGTCTTGGACTAAAAGTGAAAATAGGAAACTTTTATGCAAATGCTCCCCAGGGTCAA
CAA
TTGTCTTTATCTGAACAGATGATTCAATGGCCAGAAATATTTTCAGAGATCCCTCAGTCGGTGTGCA
GT
GAGAGTTGTGGGCCTGGATTCAGGAAAGTAACCCTGGAGAATAAGGCTATCTGCTGCTACAATTGTAC
T
CCCTGTGCAGACAATGAGATTTCTAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCAT
TAT
GCAAATACAGAGAAGAGCAACTGCTATCAAAAGTCTGTGAGCTTTCTGGGCTATGAAGACCCTTTGG
GG
ATGGCTCTAGCCAGCATAGCTTTGTGCTTATCTGCACTAACTGCCTTTGTTATTGGCATATTTGTGAA
A
CACAAAGACACTCCTATTGTTAAGGCCAATAATCAAGCTCTGAGTTACACTTTGCTCATCACACTCAAA
TTC
TGTTTCCTATGTTCTTTGAACTTCATTGGTCAGCCCAACACAGTTGCCTGCATCCTTCAGCAGACCA
CC
TTTGCAGTTGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATCACTGTGGTTCTTGCCTT
T
AAGGTCAGTTTTCCAGGGAGAATGGTAAGGTGGCTAATGATATCAAGGGGTCCAAACTATATCATTCCT
ATC
TGCACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAATATCTCCACCATACATTGACCAAG
AT
GCTCATATTGAACATGGTCACATCATCATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCACTCTGT
C
CTGGGATACCTCTGCTTCTTGGCCCTTGGGAGTTATACCATGGCCTTCTTGTCAAGAAATTTGCCTGAT
ACA
TTCAACGAATCCAAATTTATCTCACTAAGTATGCTGGTATTCTTCTGTGTCTGGATCACCTTTCTTC
CT
GTCTACCACAGCACTAAAGGGAAGGTCATGGTAGCTATGGAAGTATTCTCTATCTTGGCTTCCAGCAC
A
GCACTCCTCGCCTTCATATTTGGTCCCAAGTGTTATATTATCTTGTTGAGACCAGAGAAGAATTCATTT
CAT
CACATCAGGGAAAAAAGAACAACACATTCTAGAAGGAAGATTTTTTTCCTAAAATATAGTTGA


Translation (861 aa):
MFSWIFIFLLLQIPKFVSSDLKFNVNRCYFEITEEFHHEGDVMIGAFFPVHTFYTEKKRPHSTIPYQYLD
G
YI
QYNFKNYQYILALLFAIEEINGNPNLLPNISLGFDFYNVRFTEKETLMNTVIWLTAHVQRKVLPNYN
C
KKSNFTAAITGTSWITSAQIGTLLQLFKFPQ
ITFGPYDPFLSDRGQYPSLYQMAPKDTSLSLAIVSLMV
H
FRWSWVGLILPDDHKGNKILSDFRKEMERKRICTAFVKMIPATWTSSFVKFWENMDDTNIIIIYGDIDS
L
EGLMRNIGQRLLTWHVWVMNIEPHIIEYDNYFMLDSFHGSLIFKHNYRENFEFTKFIRTVNPKKYPEDI
Y
LPKMWYLFFMCSFSDINCQVLDSCQTNASLDMLPSQIFDVVMSEESTSIYNAVYAVAHSLHEMRLQQLQ
T
QPCENEEGMEFFPWQ
LNTFLKDIEVRVNSLDWRQRIDAEYDILNLWNLPKGLGLKVKIGNFYANAPQGQ
Q
LSLSEQMIQWPEIFSE
IPQSVCSESCGPGFRKVTLENKAICCYNCTPCADNEISNETDVDQCVKCPESH
Y
ANTEKSNCYQKSVSFLGYEDPLGMALASIALCLSALTAFVIGIFVKHKDTPIVKANNQALSYTLLITLK
F
CFLCSLNFIGQPNTVACILQQTTFAVAFTMALATVLAKAITVVLAFKVSFPGRMVRWLMISRGPNYIIP
I
CTLIQLLLCGIWMAISPPYIDQDAHIEHGHIIILCNKGSAVAFHSVLGYLCFLALGSYTMAFLSRNLPD
T
FNESKFISLSMLVFFCVWITFLPVYHSTKGKVMVAMEVFSILASSTALLAFIFGPKCYIILLRPEKNSF
H
HIREKRTTHSRRKIFFLKYS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser