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Report for CCDS49969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49969.1 Reviewed, update pending Mus musculus 17 Vmn2r91 23 108 98 CCDS HistoryNCBI Gene:665210Re-query CCDS DB by CCDS ID:49969.1Re-query CCDS DB by GeneID:665210See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172359.2 ENSMUSP00000127465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172359.2Link to Ensembl Protein Viewer:ENSMUSP00000127465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172359Re-query CCDS DB by Protein ID:ENSMUSP00000127465
Original member NCBI NM_001104540.1 NP_001098010.1 Removed not alive Link to Nucleotide Sequence:NM_001104540.1Link to Protein Sequence:NP_001098010.1Re-query CCDS DB by Nucleotide ID:NM_001104540Re-query CCDS DB by Protein ID:NP_001098010Link to BLAST:NP_001098010.1
Current member NCBI NM_001385124.1 NP_001372053.1 Pending alive Link to Nucleotide Sequence:NM_001385124.1Link to Protein Sequence:NP_001372053.1Re-query CCDS DB by Nucleotide ID:NM_001385124Re-query CCDS DB by Protein ID:NP_001372053Link to BLAST:NP_001372053.1

Chromosomal Locations for CCDS 49969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18085057 18085277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18105343 18105637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18105971 18106762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18107454 18107669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18109980 18110103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18135721 18136643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGATGTCCTCCTGGATTTTAATCTTCTGGCTCTTGCAAGTTCCAAAATTTTTCTCTGCTATTATGTTTA
ATATCAGTAGATGTTATTACATAATTACTGAAGAATTTCATCATGAAGGAGATGTTCTGATTGGTGCATT
TTTCCCTCTTCATACTTTCTACACTGGGAAGAAAATGCCAAATTCAGCTGTACCATATCAATATTTGGAT
AATTACATACAGTATAACTTTAAGAACTACAGATATATTCTCGCTCTGCTATTTGCCATTGAGGAGATCA
ATGGGAACCCCAATCTTTTACCCAACACATCTCTTGGATTTGATTTCTACAATGTCAGATTCACTGAAAA
GGACACTCTTGATAATGTTTTTATATGGCTCTCAGCTCTTGTTCAGAGAAATTATTTACCTAATTACAAT
TGTAAAAAGAGAAACTTCACTGCTGCACTCACAGGAACATCATGGAAAACATCTGCCCAAATTGGGACAT
TGCTTCAATTCCTTAAATTTCCACAGATTACTTTTGGACCTTATGATCCTCTCTTGAGTGACCATAGTCA
GTATCCTTCTCTCTACCAAATGTCCCCAAGGGACACATCTCTTTCACTTGCCATTGTTTCACTGATGGTT
CATTTTCGGTGGTCTTGGGTTGGTCTCATCATCCCAGATGACCACAAAGGAAATAAAATTCTATCAGACT
TTAGGGAGGAGATGGAGAGAAAGGGAATCTGTATAGCTTTTGTAAAAATGATCCCAGAAACATGGAATTT
ATATTTTGCCAAATTCTGGGAAAATATGGATGAGACAAATGTAATAATTATTTATGGTGACACTGATTCT
CTAGCAAGTCTAATGAGAAATATTGGGCAAAGGTTATTGACATGGAATGTCTGGGTCATGAACATTGAAC
ATCATGTTATAGACACAGCTGATTATTTCATGTTAGACTTATTCCATGGAAGCCTAATTTTTAAGCACCA
TTATAGGGAGAATTTTGAATTTACCAAATTTATTCAAACAGTTAATCCCAATAAATACCCAGAAGACATT
TATCTTCCTAAGCTGTGGTATTTCTTCTTCAAGTGCTCATTTGCTGGCATTAATTGTCATGTTTTGGCCA
ACTGTCAAACCAATGCCTCTTTGGATATTTTACCTAGTCACATATTTGATGTGGCCATGAATGATGAGAG
CAGAAATATTTACAATGGTGTATATGCTGTGGCTCACAGCCTCCATGAGATGACACTTCAGCAAATTCAA
ATGCAACAGTTTAAGAATGGTGAAGGGATGGTGTCCTTTCCATGGCAGCTTAACACTTTCCTGAAGGACA
TTGAAGTGAGAGACAAAAAGAGTTTAGGTTGGAGACAGACAATAGATGAAGAATATGACATTCTTAACCT
TTGGAATTTACCAAAGGGTCTTGGATTAAAAGTGAAAATAGGATCCTTTTCTGTAAATGCTCCCCAGGGT
CAACAGCTGTCTTTATCAGAACAGATGATACAATGGCCAGAAATATTTTCAGAGGTCCCTCGGTCTTTCT
GCACTGAGAGTTGTGGGCCTGGATTCAGGAAAGTAACCATGGAGGGCAAGGCCATCTGCTGCTACAAGTG
CACTCCTTGTGCAGACAATGAGATTTCTAATGAGACAGCAGATGTAGACCAGTGTGTGAAGTGTCCAGAG
GGTCATTATGCAAATACAGAGAAGAACAACTGCTTCCAAAAATCTGTGAGCTTTCTGGCCTATGAAGACC
CCTTGGGGATGGCTCTAGCCAGCATAGCTTTGTGCTTATCTGCACTCACTGTCTTTGTTATTGGCATATT
TGTGAAACACAGAGACACACCTATTGTCAAGGCCAATAATCGAGTACTGAGTTACATTTTGCTGATCACA
CTCACCTTCTGTTTCTTATGTTCTTTGAACTTCATTGGTCAGCCCAACACAGCTGCCTGCATCCTTCAGC
AGACCACCTTTGCAGTTGCTTTCACTGTGGCTCTTGCCACTGTGTTGGCCAAAACTATTACAGTGGTTCT
TGCTTTTAAGGTCAGTTTTCCAGGGCGAATAGTAAGGTGGTTAATGATATCAAGGGGTCCAAACTACATC
ATTCCTATCTGCACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTCTCCACCATTCAATG
ACCAAGATGCTCATTCTGAATATGGACACATCATCATTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCA
CTCTGTCCTGGGATACCTCTGTTTCTTGGCCCTTGTGAGTTATACCATGGCCTTCTTGTCTAGAAATTTG
CCTGATACATTCAACGAATCCAAGTTTCTGTCATTCAGTATGCTGGTGTTCTTCTGTGTCTGGGTCACCT
TTCTTCCTGTCTACCACAGCACTAAAGGGAAGGTCATGATTGCTATGGAAGTATTCTCTATCTTGGCTTC
CAGCACAGCACTCCTTGCCTTTATATTTGGTCCCAAGTGTTACATTATCTTGTTGAGACCAGAGAAGAAT
TTATTTCGTCATACCAGGAAAAAAAATCACATTCCAGTTGCTAAAATATAG

Translation (856 aa):
MMSSWILIFWLLQVPKFFSAIMFNISRCYYIITEEFHHEGDVLIGAFFPLHTFYTGKKMPNSAVPYQYLD
NYIQYNFKNYRYILALLFAIEEINGNPNLLPNTSLGFDFYNVRFTEKDTLDNVFIWLSALVQRNYLPNYN
CKKRNFTAALTGTSWKTSAQIGTLLQFLKFPQITFGPYDPLLSDHSQYPSLYQMSPRDTSLSLAIVSLMV
HFRWSWVGLIIPDDHKGNKILSDFREEMERKGICIAFVKMIPETWNLYFAKFWENMDETNVIIIYGDTDS
LASLMRNIGQRLLTWNVWVMNIEHHVIDTADYFMLDLFHGSLIFKHHYRENFEFTKFIQTVNPNKYPEDI
YLPKLWYFFFKCSFAGINCHVLANCQTNASLDILPSHIFDVAMNDESRNIYNGVYAVAHSLHEMTLQQIQ
MQQFKNGEGMVSFPWQLNTFLKDIEVRDKKSLGWRQTIDEEYDILNLWNLPKGLGLKVKIGSFSVNAPQG
QQLSLSEQMIQWPEIFSEVPRSFCTESCGPGFRKVTMEGKAICCYKCTPCADNEISNETADVDQCVKCPE
GHYANTEKNNCFQKSVSFLAYEDPLGMALASIALCLSALTVFVIGIFVKHRDTPIVKANNRVLSYILLIT
LTFCFLCSLNFIGQPNTAACILQQTTFAVAFTVALATVLAKTITVVLAFKVSFPGRIVRWLMISRGPNYI
IPICTLIQLLLCGIWMATSPPFNDQDAHSEYGHIIILCNKGSAVAFHSVLGYLCFLALVSYTMAFLSRNL
PDTFNESKFLSFSMLVFFCVWVTFLPVYHSTKGKVMIAMEVFSILASSTALLAFIFGPKCYIILLRPEKN
LFRHTRKKNHIPVAKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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