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Report for CCDS49964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49964.1 Public Mus musculus 17 Zfp960 23 108 98 CCDS HistoryNCBI Gene:449000Re-query CCDS DB by CCDS ID:49964.1Re-query CCDS DB by GeneID:449000See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127027.1 ENSMUSP00000123102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127027.1Link to Ensembl Protein Viewer:ENSMUSP00000123102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127027Re-query CCDS DB by Protein ID:ENSMUSP00000123102
Original member Current member NCBI NM_001005358.2 NP_001005358.2 Accepted alive Link to Nucleotide Sequence:NM_001005358.2Link to Protein Sequence:NP_001005358.2Re-query CCDS DB by Nucleotide ID:NM_001005358Re-query CCDS DB by Protein ID:NP_001005358Link to BLAST:NP_001005358.2

Chromosomal Locations for CCDS 49964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17064177 17064206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17085521 17085647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17085890 17085950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17087244 17088666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGATGAGGATATTGTCACTTCCCACAGAGAACGCAGTGACGTACTATGATGTCCTGGTGAGCTTTACTC
AGGAAGAATGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTCGAAACCTATAG
GAACCTCACTGCCATAGGCTATAACTGGGAAGAAGATAATATTGAAGAAGATTGTGAAAATTCTGGAAGA
CCCACTAGGCATCTTCAAAGGGATGGACCAAGTAATACTGGAGAGAAACCCTTTGAATGTATTCAATATG
ATGGAGCCTTTGCAAGAAACCATCATCAGTTACATAAGGACACTGGATCTTTCATGTCTTATACTGATCG
TCAAATACATAGAAGACCACACACTGAAGAAAAAGTCTATGATGGTAACCAATGTGGTAAAACCTTTTCA
TGTCACAACCATTTTGAAATCCGTAAAGGAACATATACTGGAGAAAAACCCTATGAATGTAATCAATGTG
GGAAAGCCTTTGCACGCCACAGCAATCTTCTAGACCATAAAAGAATACATACTGGAGAGAAACCCTATAA
ATGTAAGCAATGTGGCAAAGACTTTACCCATCACAGTACTCTTCATATCCATAAAAGAATACATACTAGA
GAGAAAACCTATAAATGTAACCAGTGTATGACCATTGCTCATCTTCAATGTCATAAAATAACACATACTG
GAGAGAAACCCTATGCATGTAAAAAATGTGGCAAAACCTTTGCATATCACAAAACTCTTCAAATCCATGA
AAGAACACATACTGGAGAAAAACTCTATCAATGTAACCAATGTGCCAAAGCCTTTCCATATCACAGAACT
CTTCAAATCCATGAAAGAACACATACTGGAGAGAAACCATATGAATGTAATCAATGTGGCAAAGCCTTTG
CATGTCTTAGAAATCTTCAAAATCATAAAACAACACATACTGGAGAGAAACCCTATGAATGTAACCAGTG
TGGCAGAGCCTTTAGACAATATGTTTATCTTCAGTGTCATGAAAGAATACATACTGGAGAGAAACCCTTT
GAATGTAATCAATGTGGCAAAGCCTTTGCACGTCACAGCACTCTTCAAAGACATAAAAGAACACATACTG
GAGAGAAACCCTATGAATGTAATCAATGTGGCAAAGCCTTTGCATGTCCCAGATACCTTCAAATCCATAA
AAGAACACATACTGGAGAGAAACCCTATGAATGTAATCAATGTGGCAAAGCCTTTGCATGTCACAGATAC
CTTCAAATCCATAAAAGAACACATACTGGAGAGAGACCTTATGAATGTAATCAGTGTGGCAAGGCCTTTA
CATGTCGCAGTAATCTTCAAATCCATAAAAGAACACATACTGGAGAGAGACCTTATGAATGTAATCAGTG
TGGCAAGGCCTTTACATGTCGCAGTAATCTTCAAATCCATAAAAGAACACATACTGGAGAGAAACCCTAT
GAATGTAACCAGTGTGGCAAAGCCTTTACACAATTTTTTCCTCTTAAACGTCATGAAATAACACATACCA
AAGAGAAACCCTATGAATGTAACCAGTGTGGCAAAGCCTTTACACGCCACAGTACTCTTCAAATCCATAA
AAGAACACATACTGGAGAAAAACCCGTATGA

Translation (546 aa):
MMRILSLPTENAVTYYDVLVSFTQEEWALLDPSQKSLYKDVMLETYRNLTAIGYNWEEDNIEEDCENSGR
PTRHLQRDGPSNTGEKPFECIQYDGAFARNHHQLHKDTGSFMSYTDRQIHRRPHTEEKVYDGNQCGKTFS
CHNHFEIRKGTYTGEKPYECNQCGKAFARHSNLLDHKRIHTGEKPYKCKQCGKDFTHHSTLHIHKRIHTR
EKTYKCNQCMTIAHLQCHKITHTGEKPYACKKCGKTFAYHKTLQIHERTHTGEKLYQCNQCAKAFPYHRT
LQIHERTHTGEKPYECNQCGKAFACLRNLQNHKTTHTGEKPYECNQCGRAFRQYVYLQCHERIHTGEKPF
ECNQCGKAFARHSTLQRHKRTHTGEKPYECNQCGKAFACPRYLQIHKRTHTGEKPYECNQCGKAFACHRY
LQIHKRTHTGERPYECNQCGKAFTCRSNLQIHKRTHTGERPYECNQCGKAFTCRSNLQIHKRTHTGEKPY
ECNQCGKAFTQFFPLKRHEITHTKEKPYECNQCGKAFTRHSTLQIHKRTHTGEKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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