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Report for CCDS49953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49953.1 Public Mus musculus 17 Tcp10c 23 108 98 CCDS HistoryNCBI Gene:100041352Re-query CCDS DB by CCDS ID:49953.1Re-query CCDS DB by GeneID:100041352See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097403.3 ENSMUSP00000095015.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097403.3Link to Ensembl Protein Viewer:ENSMUSP00000095015.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097403Re-query CCDS DB by Protein ID:ENSMUSP00000095015
Original member Current member NCBI NM_001167578.1 NP_001161050.1 Accepted alive Link to Nucleotide Sequence:NM_001167578.1Link to Protein Sequence:NP_001161050.1Re-query CCDS DB by Nucleotide ID:NM_001167578Re-query CCDS DB by Protein ID:NP_001161050Link to BLAST:NP_001161050.1

Chromosomal Locations for CCDS 49953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 13355760 13355939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13356341 13356556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13359746 13359904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13360865 13361023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13362172 13362271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13364193 13364296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13368079 13368216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13370198 13370282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13374699 13374816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13376187 13376376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGCACGAGCCTTCCCTTTTACAACCAGAAAGCTTACTGGTCACCTGGAGGCTAAATAGTCAGCAGAGAC
AAGCCATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAACCATAAGAAGAGGAAGATGGAGAGCACAGC
CCAGATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGGGCTGCAGAAGCAGATCTGTGACCTTGGG
ACAGAGCTCACAAGACAATCATCTTGGTGGTGCGTAGCTCACAAAGACCTCCAAAGCCAGATCGATGCTC
TGATAAAGGAGAACCAGGAGATCCGTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAA
AGCCTGTATAGGCTCGCCCACCTCGGCAAGAGCAAGCAACACTCTGCCAGTGTACATAAAGATAGAGGGA
ATTGATTCCGAGAGGACAACCTCATGGGATGAAAGAGATGAGCTTTCTGGAAGTCCTCCAAACAGAAGCA
CAATGGCCACCGGAGGAACAGACTCCCAGGATGAAAGGCTGTCTTTTACATCTGTGGATGAAAAGCCAGT
GTACATAAAGATAGAGGGAATTGATTCCGAGAGGACAACCTCATGGGATGAAAGAGATGAGCTTTCTGGA
AGTCCTCCAAACAGAAGCACAATGGCCACCGGAGGAACAGACTCCCAGGATGAAAGGCTGTCTTTTACAT
CTGTGGATGAAAAGGTTATACACATGTCTTCCAAATTTCTGCAAAGAAGCTTCGGCAGAATGTCACCAGA
ACCACTGTCTGACAGCACATTCCTGGACACAGAGTCACTGGCTGACATCTGGTCCTCAAATTCAGAGACT
TCGGACGGTGAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATCCCTTGTTTTTCCCCAAATGCACTGT
GGGTGCAGGTGGAGCGGATGCTCAGCGACGGGCGAACCATCATCACCTTCCCAAATGGAACCAGGAAGGA
GATCAGTGCTGACAAGAAGACCACCCTCATCAGGTTTTTTAACGGTGACATGAAGATCAAGTCCGATCAG
AAAGCGATTTATTATTATGCGGACGCACAAACAATGCACACAACCTACCCAGATGGTGTTGAAGTTGTGC
AGTTTCCTAACAAGTGGACTGAAAAATTCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCTGATGGGAC
AGTGAAACAGCTTAAGGATGGATGTGAAGAGACGGTGTTCCCCGATGGGACATTTGTGACAGTGAAGAGG
AACGGAGACAAAACCATCATGTTCAGCAACGGAGAGAAAGAAATCCACACGGCCAGGTTCAAGCGGAAGG
AATTCCCAGATGGCACCACCAAGACTGTGTATTGCAATGGCTGCCAGGAGACCAAGTATGCCTCAGGGAG
GGTCAGGGTCAAAGATGAGAAGGGAACTGTCATCCTGGACTGGAAGTAG

Translation (482 aa):
MHEPSLLQPESLLVTWRLNSQQRQAMLEDLSQGKGSNHKKRKMESTAQITEEDSKLDEVVGLQKQICDLG
TELTRQSSWWCVAHKDLQSQIDALIKENQEIRAELKTLKKQDAEATKACIGSPTSARASNTLPVYIKIEG
IDSERTTSWDERDELSGSPPNRSTMATGGTDSQDERLSFTSVDEKPVYIKIEGIDSERTTSWDERDELSG
SPPNRSTMATGGTDSQDERLSFTSVDEKVIHMSSKFLQRSFGRMSPEPLSDSTFLDTESLADIWSSNSET
SDGELLLHAQASRVIPCFSPNALWVQVERMLSDGRTIITFPNGTRKEISADKKTTLIRFFNGDMKIKSDQ
KAIYYYADAQTMHTTYPDGVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTFVTVKR
NGDKTIMFSNGEKEIHTARFKRKEFPDGTTKTVYCNGCQETKYASGRVRVKDEKGTVILDWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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