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Report for CCDS49894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49894.1 Public Mus musculus 16 Krtap19-1 23 108 98 CCDS HistoryNCBI Gene:170657Re-query CCDS DB by CCDS ID:49894.1Re-query CCDS DB by GeneID:170657See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081334.4 ENSMUSP00000132718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081334.4Link to Ensembl Protein Viewer:ENSMUSP00000132718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081334Re-query CCDS DB by Protein ID:ENSMUSP00000132718
Original member Current member NCBI NM_130876.3 NP_570946.2 Accepted alive Link to Nucleotide Sequence:NM_130876.3Link to Protein Sequence:NP_570946.2Re-query CCDS DB by Nucleotide ID:NM_130876Re-query CCDS DB by Protein ID:NP_570946Link to BLAST:NP_570946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570946.2 87 Q925H2 87 97.7011% 0 2

Chromosomal Locations for CCDS 49894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88869134 88869397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGAGCTACTACAGCGGCTACTATGGAGGCCTGGGCTACGGCTATGGCAGCAGCTTTGGAGGCCTGGGCT
GTGGATGTAACAGCATCCGCAGACTGGGCTGTGGCTCTGGCTATGGAGGCTTCGGATATGGCTCTGGCTA
TGGAGGCTATGGATATGGCTCTGACTATGGAGGCTATGGATATGGCTCTAGCTATGGAGGCTATGGATGT
GGCTGCCGCCGCCCTTCATGCTGTGGAAGATATGGGTTCTCCAACTTCTACTGA

Translation (87 aa):
MSYYSGYYGGLGYGYGSSFGGLGCGCNSIRRLGCGSGYGGFGYGSGYGGYGYGSDYGGYGYGSSYGGYGC
GCRRPSCCGRYGFSNFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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