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Report for CCDS49867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49867.1 Public Mus musculus 16 Cip2a 23 108 98 CCDS HistoryNCBI Gene:224171Re-query CCDS DB by CCDS ID:49867.1Re-query CCDS DB by GeneID:224171See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048374.5 ENSMUSP00000044714.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048374.5Link to Ensembl Protein Viewer:ENSMUSP00000044714.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048374Re-query CCDS DB by Protein ID:ENSMUSP00000044714
Original member Current member NCBI NM_172616.2 NP_766204.2 Accepted alive Link to Nucleotide Sequence:NM_172616.2Link to Protein Sequence:NP_766204.2Re-query CCDS DB by Nucleotide ID:NM_172616Re-query CCDS DB by Protein ID:NP_766204Link to BLAST:NP_766204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766204.2 907 Q8BWY9 907 100% 0 0

Chromosomal Locations for CCDS 49867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 48994278 48994379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48997371 48997518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48998955 48999067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49000261 49000355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49000991 49001087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49001566 49001688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49001792 49001937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49003927 49004002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49004269 49004484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49005688 49005847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49007050 49007191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49009078 49009177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49010709 49010827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49013175 49013370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49013797 49013871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49013965 49014075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49014893 49015089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49015944 49016057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49016279 49016361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49017352 49017491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 49018375 49018545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGGATTCCACCGCCTGCTTGAAGTCCCTGCTCCTGAGCATCAGTCAGTACAAGGCCGTTAAGTCGGAGG
CGAACGCCACTCAGCTGCTGAGGCACTTGGAGGTAGTTTCTGGACAAAAGCTCACACGACTGTTTACATC
ACATCAGATATTACCAAGTGAATGCTTGAGCTGCCTTGTAGAACTTCTCGAAGACCCAAACATAAGTGCT
TCACTGATCTTAAGTATTATCAGTTTGCTGTCTCAACTGGCTATAGATAATGAAACCCGAGACTGTCTTC
AGAATATATACAATCTGAATAGTGTGCTGTCAGGAGTGGTTTGTCGGAGCAGCGCTTGCCACAATGATTC
CGTGTTTTTACAGTGCATTCAACTGCTGCAAAGGTTAACATATAATGCCAAATTTTTCCATTCTGGTGCC
CATATAGATGACTTAATTACATTCTTGATTGGTCATGTTCAGTCTTCTGAAGATGAGCTAACAATGCCTT
GTCTAGGACTATTGGCAAATCTTTGTCGGCACAATCTTTCTGTTCAAACACAAATAAAAACTTTGAGTAA
TGTGAAATCTTTTTACCGAACTCTCATAAGCTTCCTAGCACACAGCAGTCTGACTGTGGTTGTGTTTGCA
CTTTCAATATTATCCAGTTTAACACTAAATGAAGAAGTGGGAGAAAAGCTATTTCATGCTCGAAACATTC
ATCAGACTTTCCAATTAATATTTAATATTCTCATAAATGGTGATGGTACCCTAACAAGAAAGTACTCAGT
TGACCTACTGATGGATCTCCTTAAAAACCCTAAAATTGCTGATTATCTGACCAGGTATGAGCACTTTTCT
TCATGTCTTAGTCAAGTACTAGGACTTCTAAATGCAAAAGACCCTGATTCTTCTTCCAAGGTTTTAGAAT
TACTTCTTGCCTTCTGTGCAGTGACTCAGCTGCGCCATGTACTCAGTCAGATGATGTTTGAACAGTCTCC
ATCTGGCAACATTCTGGGAAGCCGTCCTAAGAGCTTAGAGCCTACTGCGGCTCTACTTCGCTGGTTAAGC
CAACCCTTGGATGGAGCTGAAAACTGTTCTGTGTTAGCATTGGAGTTGTTCAAGGAAATCTTCGAGGATG
TCATTGATACTGGTAACTGTTCCTCAACTGACCATTTTGTGACCCTTCTGCTTCCTACAATTCTTGATCA
GCTTCAGTTCAAAGAACAAAATCTGGATGAGACCTTAGTAAGAAATAAGTGTGAAAGGATGGTCAAAGCC
ATTGAAGTTTTATTAACTCTGTGTGGAGACGACTCTCTGAAAATGCATGTTGTAAAAATATTGACTACTC
TAAAGTGCACCACGCTTATAGAGCAGCAGTTTACATATGGCAAGATTGACCTGGGGTTTGGAACAAAGGT
AGCCGATTCTGAGTTGTGCAAACTTGCTGCTGATGTAATTTTGAAAACTCTTACTTTGATGAACAAACTT
AAACAGTTGGTCCCTGGTATGGAAGTAAGCTTCTACAAAATCCTTCAGGATCCGCGGTTGATTACTCCTT
TAGCTTTTGCTTTAACGTCAGATAATAGAGAGCAAGTCCAGTCTGGATTGGGAATACTGCTTGAAGCCTC
TCCCCTGCCCGATTTCCCTGCCTTCGTACTTGGAGAAAGTATAGCAGCAAACAATGTATACAGACAGCAA
GAAACTGAGCATCTGCCCAGGAAAATGACTTTCCAGCCCTTAAATCATGGTTTTTCAACATCAGCAAAGT
GCTTAACGCCTCCTCCTTCAAAAGATAATGCTCCTGCGTTGAACATTGAGGACCTCATAGAGAAACTGCA
GGCTGGAGTGATGGTAAAGGATCAGATTAGTGATATAAGAATATCTGACATCATGGATGTTTATGAGATG
AAACTTTCCACATTAGCCTCTAAAGAGAGCAGGTTACAAGATCTCCTGGAAGCAAAAGCCCTGGCTCTTG
CACAGGCTGACAGACTGATCGCTCAGTATCGCTGTCAGAGAACGCAAGCAGAGACAGAGGCACGAACACT
TGCGGGTATGTTACGAGAAGTTGAGAGAAAAAATGAAGAGCTTAGTGTGTTGCTGAAGTCACAACAGCTC
GAGTCAGAAAGAGCCCAAAATGATATTGAGCATCTCTTTCAACACAGTAAGAAGCTGGAATCTGTAGCTG
CAGAACATGAAATACTGACAAAGTCCTACATGGAACTTGTTCAAAGAAATGAAGCTACTGAAAAGAAGAA
TACTGACTTACAGACTACCTGTGAATCTCTGAATAAACACATTGAGACAATGAAAAAATTGAACGAGGCG
CTCAAGCAACAAAATGAAAAAACTATTGCTCAGTTGATAGAGAAAGAAGAGCAGAGAAAAGAAGTCCAGA
GCCAGTTAGCAGACCGAGAATGTAAACTATCAAATTTGCATAAAATAGCAAAATCCCAAGAAGAAAAACT
TAATGTTTTACAAAAGGAAAAGGAAGATAAGCAGGAAACCATTGATATCCTTAGAAAAGAATTAAGCAGA
ACAGAACAGATAAGGAAAGAGTTGAGCATTAAGGCTTCCTCCCTAGAAATGCACAAGGCTCAATTAGAAG
GTCGTTTGGAAGAGAAGGAGTCTTTGTTGAAACTTCAGCAAGAGGAGTTGAACAAACATTCTCACATGAT
AGCAATGATCCACAGTTTAAGTGGTGGAAAAATAAGCCCAGAAACTGTGAACCTTAGTATATAA

Translation (907 aa):
MDSTACLKSLLLSISQYKAVKSEANATQLLRHLEVVSGQKLTRLFTSHQILPSECLSCLVELLEDPNISA
SLILSIISLLSQLAIDNETRDCLQNIYNLNSVLSGVVCRSSACHNDSVFLQCIQLLQRLTYNAKFFHSGA
HIDDLITFLIGHVQSSEDELTMPCLGLLANLCRHNLSVQTQIKTLSNVKSFYRTLISFLAHSSLTVVVFA
LSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFS
SCLSQVLGLLNAKDPDSSSKVLELLLAFCAVTQLRHVLSQMMFEQSPSGNILGSRPKSLEPTAALLRWLS
QPLDGAENCSVLALELFKEIFEDVIDTGNCSSTDHFVTLLLPTILDQLQFKEQNLDETLVRNKCERMVKA
IEVLLTLCGDDSLKMHVVKILTTLKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLTLMNKL
KQLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLGILLEASPLPDFPAFVLGESIAANNVYRQQ
ETEHLPRKMTFQPLNHGFSTSAKCLTPPPSKDNAPALNIEDLIEKLQAGVMVKDQISDIRISDIMDVYEM
KLSTLASKESRLQDLLEAKALALAQADRLIAQYRCQRTQAETEARTLAGMLREVERKNEELSVLLKSQQL
ESERAQNDIEHLFQHSKKLESVAAEHEILTKSYMELVQRNEATEKKNTDLQTTCESLNKHIETMKKLNEA
LKQQNEKTIAQLIEKEEQRKEVQSQLADRECKLSNLHKIAKSQEEKLNVLQKEKEDKQETIDILRKELSR
TEQIRKELSIKASSLEMHKAQLEGRLEEKESLLKLQQEELNKHSHMIAMIHSLSGGKISPETVNLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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