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Report for CCDS49838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49838.1 Public Mus musculus 16 Mix23 23 108 98 CCDS HistoryNCBI Gene:381045Re-query CCDS DB by CCDS ID:49838.1Re-query CCDS DB by GeneID:381045See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163352.8 ENSMUSP00000131929.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163352.8Link to Ensembl Protein Viewer:ENSMUSP00000131929.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163352Re-query CCDS DB by Protein ID:ENSMUSP00000131929
Original member Current member NCBI NM_001159421.1 NP_001152893.1 Accepted alive Link to Nucleotide Sequence:NM_001159421.1Link to Protein Sequence:NP_001152893.1Re-query CCDS DB by Nucleotide ID:NM_001159421Re-query CCDS DB by Protein ID:NP_001152893Link to BLAST:NP_001152893.1

Chromosomal Locations for CCDS 49838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36072087 36072137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36085017 36085163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36089901 36089960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36091834 36091884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGGCGGCGCCCAGTGGCAGTGTGAACTGTGAAGAGTTCGCCGAGTTCCAGTTGATGGCAGCTCATGTCA
GTAGGGACAGAGTTATAAAGAACTGTATAGCCCAGACCTCAGCAGTAGTAAAAAGTCTCCGAGAAGAGAG
AGAAAAGAACCTGGATGACTTAACGTTATTAAAGCGACTTAGAAAAGAACAGACAAAGTTGAAATGGATG
CAGTCAGAACTAAATGTCGAAGAAGTGGTAAATGACAGGAGCTGGAAGGTGTTTAATGAACGCTGCCGAG
TTCACTTCAAGCCTCCAAAGAATGAGTAG

Translation (102 aa):
MAAPSGSVNCEEFAEFQLMAAHVSRDRVIKNCIAQTSAVVKSLREEREKNLDDLTLLKRLRKEQTKLKWM
QSELNVEEVVNDRSWKVFNERCRVHFKPPKNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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