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Report for CCDS49825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49825.1 Public Mus musculus 16 Rnf168 23 108 98 CCDS HistoryNCBI Gene:70238Re-query CCDS DB by CCDS ID:49825.1Re-query CCDS DB by GeneID:70238See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171474.1 ENSMUSP00000126484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171474.1Link to Ensembl Protein Viewer:ENSMUSP00000126484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171474Re-query CCDS DB by Protein ID:ENSMUSP00000126484
Original member Current member NCBI NM_027355.2 NP_081631.2 Accepted alive Link to Nucleotide Sequence:NM_027355.2Link to Protein Sequence:NP_081631.2Re-query CCDS DB by Nucleotide ID:NM_027355Re-query CCDS DB by Protein ID:NP_081631Link to BLAST:NP_081631.2

Chromosomal Locations for CCDS 49825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32278109 32278415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32282311 32282387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32285370 32285549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32289119 32289240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32291903 32291981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32298388 32299326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGAAGATGGCTGCACCTAAAACCTCCATCCCTTCCTTAGCCGAATGTCAGTGCGGGATCTGTATGGAAA
TCCTCCTAGAGCCTGTAACCCTACCTTGCAACCACACGCTCTGTAACCCATGCTTCCAGTCCACTGTTGA
AAAGGCCAATCTATGCTGTCCCTTCTGTCGTCGCCGGGTCTCTTCGTGGACTCGGTACCATACCCGAAGA
AATTCTCTGGTCAATACAGACCTGTGGGAGATTATTCAAAAACACTATGCAAAGGAATGCAAGCTTAGAA
TCTCTGGACAAGAATCAAAGGAAATCATTGATGAGTGCCAGCCAGTTCGTCGGCTCAGTGAACCTGGGGA
GTTGAGGCGAGAATATGAAGAGGAGATAAGCAGGGTGGAGGCTGAGCGACAAGCCAGCAAGGAAGAGGAA
AACAAAGCCAGTGAGGAGTACATCCAGAGATTGTTGGCTGAGGAGGAGGAGGAGGAGAAAAGACAGAGAG
AAAAAAGAAGAAGTGAGATGGAAGAACAGCTGAGAGGCGATGAAGAACTGGCTAGGAGCCTGAGCACCAG
TATCAACAGCAACTATGAGAGAAATACCTTGGCTTCTCCTTTGAGTTCCAGAAAATCAGATCCAGTCACA
AACAAGTCCCAGAAGAAAAATACAAGTAAACAAAAAACCTTTGGAGATATTCAAAAATATTTGTCACCTA
AGTTGAAGCCTGGGACCGCCTTGGCATGTAAGGCTGAGCTTGAGGAAGACATCTGCAAGTCTAAGGAAAC
TGATAGGAGTGACACGAAGAGCCCTGTGTTGCAAGACACAGAAATTGAAAAAAATATACCAACACTTTCT
CCTCAGACCTGCCTGGAAACTCAAGAACAAGGTTCGGAGTCTTCTGCAGGGATACCCGGGCCACAGTTAT
GTGTAGGAGACACTAAAGAGTCCCTTGAGGGAAAAGTTGAAACAGTATCAACCAGTCCTGATGATTTATG
TATTGTAAATGATGATGGACCTAGAGCCACAGTTTTTTACTCTAATGAAGCTGCAGTTAACTCTTCTAGT
AAAATAGAAAATGAAGAATACTCTGTGACAGGTGTGCCCCAGTTAACTGGGGGCAACAGAGTTCCAACAG
AGAGTAGAGTGTATCACTTACTAGTTGAAGAAGAGATTTCCGACAGAGAAAACCAGGAATCTGTATTTGA
AGAAGTCATGGATCCATGTTTTTCTGCAAAAAGAAGGAAAATATTCATCGAATCCTCCTCAGATCAAGAA
GAAACAGAAGTGAATTTTACACAAAAACTGATAGATTTGGAACATATGCTTTTTGAGAGACATAAGCAAG
AAGAGCAGGACAGATTGTTAGCATTACAACTTCAGAAAGAGGTAGATAAAGAGCAAATGGTGCCAAACCG
GCAGAAAGGATCCCCAGATCAGTACCAGCTACGCACACCCTCACCCCCAGACAGGCTGCTGAATAGACAA
AGGAAGAATTCCAAAGATAGGAACTCCCTACAGCAAACTAATGCAGATCACTCAAAATCTCCGAGGAACA
CAAAAGGTGACTATTGGGAGCCCTTTAAAAACACATGGAAGGATTCAGTTAATGGAACAAAGATGCCAAC
TTCTACTCAAGATAATTGTAATGTATCTAAAAGTGCCTATACCGTACAGCATAGAAAGTCCCAGAGAAGC
ATTGTTCAAATGTTTCAGAGATAA

Translation (567 aa):
MKMAAPKTSIPSLAECQCGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTRYHTRR
NSLVNTDLWEIIQKHYAKECKLRISGQESKEIIDECQPVRRLSEPGELRREYEEEISRVEAERQASKEEE
NKASEEYIQRLLAEEEEEEKRQREKRRSEMEEQLRGDEELARSLSTSINSNYERNTLASPLSSRKSDPVT
NKSQKKNTSKQKTFGDIQKYLSPKLKPGTALACKAELEEDICKSKETDRSDTKSPVLQDTEIEKNIPTLS
PQTCLETQEQGSESSAGIPGPQLCVGDTKESLEGKVETVSTSPDDLCIVNDDGPRATVFYSNEAAVNSSS
KIENEEYSVTGVPQLTGGNRVPTESRVYHLLVEEEISDRENQESVFEEVMDPCFSAKRRKIFIESSSDQE
ETEVNFTQKLIDLEHMLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDQYQLRTPSPPDRLLNRQ
RKNSKDRNSLQQTNADHSKSPRNTKGDYWEPFKNTWKDSVNGTKMPTSTQDNCNVSKSAYTVQHRKSQRS
IVQMFQR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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