NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49783.1 Public Mus musculus 16 Klhl22 23 108 98 CCDS HistoryNCBI Gene:224023Re-query CCDS DB by CCDS ID:49783.1Re-query CCDS DB by GeneID:224023See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120488.2 ENSMUSP00000112412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120488.2Link to Ensembl Protein Viewer:ENSMUSP00000112412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120488Re-query CCDS DB by Protein ID:ENSMUSP00000112412
Original member Current member EBI ENSMUST00000165790.8 ENSMUSP00000127227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165790.8Link to Ensembl Protein Viewer:ENSMUSP00000127227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165790Re-query CCDS DB by Protein ID:ENSMUSP00000127227
Original member Current member NCBI NM_001359068.1 NP_001345997.1 Accepted alive Link to Nucleotide Sequence:NM_001359068.1Link to Protein Sequence:NP_001345997.1Re-query CCDS DB by Nucleotide ID:NM_001359068Re-query CCDS DB by Protein ID:NP_001345997Link to BLAST:NP_001345997.1
Original member Current member NCBI NM_145479.4 NP_663454.3 Accepted alive Link to Nucleotide Sequence:NM_145479.4Link to Protein Sequence:NP_663454.3Re-query CCDS DB by Nucleotide ID:NM_145479Re-query CCDS DB by Protein ID:NP_663454Link to BLAST:NP_663454.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345997.1 634 Q99JN2-1 634 100% 0 0
NP_663454.3 634 Q99JN2-1 634 100% 0 0

Chromosomal Locations for CCDS 49783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17764420 17764646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17771704 17771869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17776402 17777120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17784203 17784395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17789137 17789370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17792426 17792791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGCTGAGGAGCAGGACTTTGCCCAGCTGTGCAGGCTGCCCACACAGCCCTCCCACTCCCACTGTGTCA
ACAATACCTATCGAAGCACACAGCACTCCCAGGCCCTGCTCCGGGGCCTGCTGGCTTTGCGAGACAGTGG
GATCCTCTTTGACGTTGTCCTGGTGGTAGAGGGGAAGCACATTGAGGCCCATCGGATTCTGCTAGCTGCA
TCGTGTGATTATTTCAGAGGAATGTTTGCTGGGGGATTGAAGGAGATGGAGCAGGAAGAGGTCTTGATCC
ACGGTGTGTCTTACAATGCCATGTGCCAAATCCTGCACTTCATATACACTTCTGAACTAGAGCTCAGCCT
GAGCAATGTGCAGGAGACCCTGGTTGCTGCCTGCCAACTTCAGATACCAGAAATTATCCACTTCTGCTGT
GATTTCCTCATGTCATGGGTAGATGAGGAGAATATCCTTGATGTCTACCGGCTAGCAGACCTCTTTGACT
TGAACCATCTGACCCAACAGCTAGATACCTACATCCTCAAAAACTTTGTGGCCTTCTCCAGAACTGACAA
GTACCGCCAGCTTCCCTTGGAGAAGGTCTACTCTCTCCTCAGCAGCAATCGCCTGGAGGTTTCCTGTGAG
ACTGAAGTGTATGAAGGGGCCCTGCTCTACCATTACTCCCTAGAGCAGGTGCAGGCTGACCAGATCTCAC
TGAATGAGCCCCCCAAGCTCCTAGAGACTGTGCGCTTTCCCCTGATGGAAGCTGAGGTCCTTCAGCGGCT
GCATGACAAGCTTGGTCCTAGCCCACTGAGGGACACAGTGGCCAGTGCCCTTATGTACCACCGGAATGAG
ATCCTGCAGCCCAGCCTTCAGGGCCCACAGACAGAGCTTCGCTCGGACTTCCAGTGTGTTGTGGGCTTTG
GGGGTATTCACTCCACACCGTCTACAATCCTCAGTGACCAGGCCAAGTACCTGAATCCTCTACTGGGAGA
GTGGAAACACTTCACTGCCTCTCTGGCGCCCCGAATGTCCAATCAGGGCATTGCAGTGCTCAACAACTTC
GTGTACTTAATTGGAGGGGACAATAATGTCCAAGGATTTCGAGCTGAGTCCCGATGCTGGAGGTATGACC
CAAGGCACAATCGCTGGTTCCAGATCCAGTCCTTGCAGCAAGAACATGCAGACCTATGTGTGTGTGTAGT
GGGCAAGTACATCTATGCTGTGGCAGGCCGTGACTACCACAATGACCTGAGTGCTGTGGAGCGCTATGAC
CCTGCCACCAACTCCTGGGACTATGTGGCCCCACTCAAGAAGGAGGTATATGCCCATGCAGGCACCACAC
TGCAGGGGAAGATGTATATTACCTGTGGTCGCAGAGGAGAGGACTACCTGAAAGAGACACACTGCTATGA
CCCAGGAAGCAACACGTGGCATACTCTGGCTGACGGGCCTGTGCGACGGGCCTGGCATGGCATGGCTGCC
CTCCTCGACAAGCTGTTTGTGATTGGAGGCAGCAACAATGATGCTGGCTACAGAAGGGATGTGCACCAGG
TGGCTTGCTACAGTTGTACATCTCGTCAGTGGTCATCGGTCTGCCCACTCCCAGCTGGGCATGGTGAGCC
TGGCATTGCTGTGCTAGACAGCAGGATATATGTGCTGGGTGGCCGCTCTCACAACCGAGGCAGCCGTACA
GGCTACGTGCACATCTACGACATGGAGAAAGACTGCTGGGAAGAGGGACCCCAGCTGAACAATTCCATCT
CAGGCCTGGCAGCCTGTGTGCTCACCCTGCCTCGATCCCTGCTCCATGAGCAACCCCGAGGGACCCCCAA
CCGTAGCCAGGCAGATGCAGACTTTGCTTCTGAGGTGATGAGTGTGTCTGACTGGGAAGAGTTTGACAAC
TCTAGCGAGGACTAG

Translation (634 aa):
MAEEQDFAQLCRLPTQPSHSHCVNNTYRSTQHSQALLRGLLALRDSGILFDVVLVVEGKHIEAHRILLAA
SCDYFRGMFAGGLKEMEQEEVLIHGVSYNAMCQILHFIYTSELELSLSNVQETLVAACQLQIPEIIHFCC
DFLMSWVDEENILDVYRLADLFDLNHLTQQLDTYILKNFVAFSRTDKYRQLPLEKVYSLLSSNRLEVSCE
TEVYEGALLYHYSLEQVQADQISLNEPPKLLETVRFPLMEAEVLQRLHDKLGPSPLRDTVASALMYHRNE
ILQPSLQGPQTELRSDFQCVVGFGGIHSTPSTILSDQAKYLNPLLGEWKHFTASLAPRMSNQGIAVLNNF
VYLIGGDNNVQGFRAESRCWRYDPRHNRWFQIQSLQQEHADLCVCVVGKYIYAVAGRDYHNDLSAVERYD
PATNSWDYVAPLKKEVYAHAGTTLQGKMYITCGRRGEDYLKETHCYDPGSNTWHTLADGPVRRAWHGMAA
LLDKLFVIGGSNNDAGYRRDVHQVACYSCTSRQWSSVCPLPAGHGEPGIAVLDSRIYVLGGRSHNRGSRT
GYVHIYDMEKDCWEEGPQLNNSISGLAACVLTLPRSLLHEQPRGTPNRSQADADFASEVMSVSDWEEFDN
SSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH