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Report for CCDS49766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49766.1 Public Mus musculus 16 Shisa9 23 108 98 CCDS HistoryNCBI Gene:72555Re-query CCDS DB by CCDS ID:49766.1Re-query CCDS DB by GeneID:72555See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170672.8 ENSMUSP00000132646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170672.8Link to Ensembl Protein Viewer:ENSMUSP00000132646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170672Re-query CCDS DB by Protein ID:ENSMUSP00000132646
Original member Current member NCBI NM_028277.2 NP_082553.2 Accepted alive Link to Nucleotide Sequence:NM_028277.2Link to Protein Sequence:NP_082553.2Re-query CCDS DB by Nucleotide ID:NM_028277Re-query CCDS DB by Protein ID:NP_082553Link to BLAST:NP_082553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082553.2 424 Q9CZN4-1 424 100% 0 0

Chromosomal Locations for CCDS 49766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11984581 11985143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11997053 11997180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12244608 12244763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12252785 12252832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12267424 12267803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCGCCGAGTCCTTCGGCTGCTTCTCGGCTGCTTCCTCACCGAGCTGTGTGCCCGCATGTGCCGGGCGC
AGGAGCGATCTGGGCACGGGCAGCTAGCGCAACTGGGCGGCGTACTGCTGCTCACAGGGGGCAACCGCTC
CGGAGCCGCCTCCGGAGAGGCCGGCGAGGGCGTCGGGGGCTCGGACGCACCGCCGACTCGAGCGCCCACG
CCAGACTCCTGTCGGGGCTACTTCGATGTCATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCG
ACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGTTTAAGAAGCGGCGACTGAACCA
GAGCACCTGTACCAACTACGACACGCCACTCTGGCTTAACACGGGCAAGCCCCCAGCGCGTAAGGATGAC
CCCTTGCACGACCCCACCAAGGACAAGACCAACCTTATCGTCTACATCATCTGCGGGGTGGTGGCTGTCA
TGGTGCTGGTGGGCATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAAAGGGAACACATGTC
CAGAGCCCTTGCGGATGTCATGAGGCCACAGGGCCACTGCAACACTGACCACATGGAGAGAGACCTTAAC
ATCGTGGTCCACGTGCAGCATTATGAGAACATGGACTCAAGAACCCCCATAAATAATCTCCATACCACTC
AGATGAACAACGCAGTGCCCACTTCTCCTCTGCTCCAGCAGATGGGACACCCACATTCATACCCCAACCT
GGGTCAGATTTCTAATCCATATGAACAGCAGCCTCCAGGCAAAGAGCTCAACAAGTACGCCTCCTTAAAG
GCAGTAGGAAATTCTGATGGTGACTGGGCAGTGGCAACGCTTAAGTCACCAAAAGCTGACAAGGTCAATG
ATGACTTCTACGCCAAAAGAAGGCACCTGGCAGAGCTGGCTGTCAAGGGAAATCTCCCTTTGCACCCTGT
AAGAGTGGAAGATGAGCCTCGCGCCTTCAGCCCAGAGCACGGGCCTGCACAGCAGAATGGACAGAAGTCT
CGCACCAACAAGATGCCCCCACATCCCCTGGCCTACAACTCTACTGCCAACTTTAAGACCTGGGACCCCA
GTGACCAGTCTCTCCGGCGGCAGGCTTATGGCAACAAGGGCAAGCTTGGCATAGCTGAGTCAGGCTCTTG
TGACCCCTTGGGGACTCGCACCCAGCACTTCCCACCCACACAGCCATATTTCATCACTAACAGCAAAACA
GAAGTGACTGTCTGA

Translation (424 aa):
MRRVLRLLLGCFLTELCARMCRAQERSGHGQLAQLGGVLLLTGGNRSGAASGEAGEGVGGSDAPPTRAPT
PDSCRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDD
PLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGHCNTDHMERDLN
IVVHVQHYENMDSRTPINNLHTTQMNNAVPTSPLLQQMGHPHSYPNLGQISNPYEQQPPGKELNKYASLK
AVGNSDGDWAVATLKSPKADKVNDDFYAKRRHLAELAVKGNLPLHPVRVEDEPRAFSPEHGPAQQNGQKS
RTNKMPPHPLAYNSTANFKTWDPSDQSLRRQAYGNKGKLGIAESGSCDPLGTRTQHFPPTQPYFITNSKT
EVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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