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Report for CCDS49708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49708.1 Public Mus musculus 15 Kif21a 23 108 98 CCDS HistoryNCBI Gene:16564Re-query CCDS DB by CCDS ID:49708.1Re-query CCDS DB by GeneID:16564See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088614.12 ENSMUSP00000085985.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088614.12Link to Ensembl Protein Viewer:ENSMUSP00000085985.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088614Re-query CCDS DB by Protein ID:ENSMUSP00000085985
Original member Current member NCBI NM_001109040.2 NP_001102510.1 Accepted alive Link to Nucleotide Sequence:NM_001109040.2Link to Protein Sequence:NP_001102510.1Re-query CCDS DB by Nucleotide ID:NM_001109040Re-query CCDS DB by Protein ID:NP_001102510Link to BLAST:NP_001102510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001102510.1 1672 Q9QXL2-1 1672 100% 0 0

Chromosomal Locations for CCDS 49708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 90934450 90934543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90935635 90935834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90937161 90937331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90938985 90939102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90940431 90940595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90942114 90942294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90943765 90943901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90949006 90949044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90951246 90951374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90952711 90952818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90956295 90956509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90959077 90959131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90959688 90959748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90964975 90964995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90965467 90965632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90966337 90966438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90967196 90967390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90968061 90968214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90968357 90968571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90968763 90968831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90969778 90969885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90970679 90970878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90971083 90971271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90971665 90971788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90972625 90972715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90976471 90976509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90980795 90980998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90984734 90984797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90985242 90985431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90985785 90985980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90991710 90991825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90993701 90993868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90994341 90994475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90995484 90995633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90997543 90997725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90997833 90998055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91049659 91049702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5019 nt):
ATGTTGGGCGCTGCGGACGAGAGCTCGGTGCGCGTGGCTGTCAGAATAAGACCACAGCTTGCCAAAGAGA
AGATCGAAGGTTGCCATATCTGCACGTCAGTCACACCGGGAGAGCCTCAGGTCTTCCTCGGGAAGGATAA
GGCCTTTACTTTTGATTATGTGTTTGACATTGACTCCCAGCAGGAGCAGATCTACACCCAGTGCATCGAA
AAGCTCATTGAAGGCTGTTTTGAAGGCTACAATGCCACCGTGTTTGCCTATGGACAAACCGGAGCTGGGA
AAACCTACACGATGGGAACCGGATTTGACGTGAACATCATGGAGGAAGAGCAGGGCATCATCTCTCGTGC
TGTTAGACACCTGTTCAAGAGTATTGATGAGAAAAAGACCTCAGCGATTAAAAACGGGCTGCCCCCTCCT
GAATTCAAAGTGAATGCCCAGTTCCTAGAGCTCTATAATGAAGAGGTCCTTGACTTGTTTGATACCACTC
GGGATATTGATGCAAAAAATAAAAAATCAAATATAAGAATTCATGAAGATTCAACTGGAGGAATTTATAC
TGTGGGCGTCACAACACGCACTGTGAATACAGAACCGGAGATGATGCAGTGTCTGAAGCTGGGCGCTCTC
TCGCGCACCACGGCCAGCACCCAGATGAACGTACAGAGCTCTCGTTCACACGCCATCTTTACCATTCACG
TGTGTCAAACCAGAGTGTGTCCCCAAACAGATGCTGAGAACGCAACTGATAATAAGCTGATCTCCGAATC
GTCGCCAATGAATGAGTTTGAGACGCTGACGGCGAAGTTTCACTTTGTTGATCTGGCGGGATCGGAAAGA
CTGAAGAGAACCGGAGCTACAGGCGAGAGAGCAAAAGAGGGCATTTCCATCAACTGCGGGCTTTTGGCTC
TTGGGAATGTAATCAGCGCCTTGGGGGACAAGAGCAAGAGAGCCACCCATGTCCCTTACAGAGACTCTAA
GCTGACAAGACTCTTGCAGGATTCCCTTGGGGGTAACAGCCAAACCATCATGATAGCATGCGTCAGCCCT
TCAGACAGGGATTTCATGGAGACGTTAAACACTCTGAAGTACGCCAATCGAGCGAGAAATATCAAGAACA
AGGTGATGGTCAATCAAGACAGAGCCAGTCAGCAAATCAACGCGCTGCGGAGCGAGATCACGCGCCTTCA
GATGGAGCTCATGGAATACAAAACCGGTAAAAGAATAATTGACGAGGAAGGCGTGGAAAGCATCAATGAC
ATGTTTCATGAGAATGCTATGCTGCAGACGGAAAATAATAATCTGCGTGTAAGAATAAAAGCCATGCAGG
AGACCGTTGATGCACTGAGGGCCAGAATCACGCAGCTTGTCAGTGAGCAGGCCAACCAAGTTCTTGCCCG
AGCAGGTGAAGGGAACGAAGAGATCAGTAATATGATTCATAGTTATATCAAAGAAATTGAAGACCTCAGG
GCAAAATTATTAGAAAGTGAAGCAGTGAACGAGAACCTTCGGAAGAACTTGACCAGAGCCACGGCGAGAT
CTCCTTACTTCAGTGCCTCCTCAGCTTTCTCGCCTACTATACTGTCTTCAGACAAGGAGACTATCGAAAT
TATAGATCTAGCAAAGAAAGACTTGGAGAAGCTAAAACGGAAAGAGAAGAAGAAGAAGAAAAGGCTACAG
AAACTTGAGGAAAGCGGTCGAGAAGAAAGAAGTGTTGCCGGGAAAGACGATAATGCAGACACTGACCAGG
AGAAGAAAGAAGAAAAGGGTGTTTCAGAGAAAGAAAACAATGAGCTAGACGTGGAAGAGAATCAAGAAGT
GAGTGACCACGAGGATGAGGAAGAGGAGGAAGAGGACGAGGAGGAAGAGGATGACATTGAAGGAGAAGAA
AGCTCTGATGAATCAGATTCCGAATCTGATGAAAAAGCTAACTATCAAGCCGACTTAGCAAATATCACCT
GCGAGATTGCGATTAAGCAGAAGCTGATCGACGAACTGGAGAACAGCCAGAAACGGCTGCAGACCCTGAA
AAAGCAGTACGAGGAGAAGCTGATGATGCTCCAACATAAGATCCGGGACACGCAGCTGGAGAGGGACCAG
GTGCTCCAGAACCTAGGCTCGGTGGAGTCATACTCGGAAGAAAAGGCCAAGAAAGTGAAGTGCGAATATG
AGAAGAAGCTCCACGCCATGAACAAAGAGCTGCAGCGACTGCAGACGGCCCAAAAGGAGCACGCCAGGCT
CCTCAAAAACCAGTCTCAGTATGAAAAGCAGCTCAAGAAACTGCAGCAAGACGTCATGGAAATGAAGAAA
ACCAAGGTTCGTCTAATGAAGCAGATGAAAGAAGAGCAGGAGAAAGCCCGGCTGACAGAATCTCGAAGGA
ACCGGGAAATCGCTCAGCTGAAGAAGGATCAGCGCAAGCGAGATCATCAACTTAGACTTCTAGAGGCCCA
GAAAAGAAATCAAGAAGTAGTTCTGCGACGCAAAACGGAAGAGGTTACAGCTCTCCGCAGGCAAGTGAGG
CCCATGTCTGATAAAGTAGCGGGAAAAGTTACTCGGAAGCTGAGCTCATCCGAAAGCCCCGCTCCGGACA
CAGGTTCCAGTGCGGCTTCCGGGGAAGCAGACACATCACGGCCAGGCACCCAGCAGAAAATGAGGATCCC
CGTGGCAAGAGTCCAGGCATTACCAACACCTACAACAAATGGCACCAGGAAAAAATATCAGAGGAAAGGA
TTCACTGGCCGGGTGTTCACTTCCAAGACAGCCCGCATGAAGTGGCAGCTACTGGAGCGCCGGGTGACCG
ACATCATCATGCAGAAAATGACCATCTCCAACATGGAGGCGGACATGAACAGACTCCTCAGGCAACGGGA
AGAACTCACAAAAAGGCGAGAGAAACTTTCTAAAAGGAGAGAGAAGATAGTCAAGGAGAGCGGAGAGGGA
GATAAAAGTGTGGCTAACATCATCGAGGAGATGGAGTCCCTGACAGCCAACATAGATTACATCAATGATA
GCATTGCCGACTGTCAAGCCAACATCATGCAGATGGAGGAGGCAAAGGAAGAAGGGGAGACATTGGATGT
CACCGCTGTCATTAATGCCTGTACACTGACAGAAGCTCGGTACCTGCTAGATCACTTCCTGTCAATGGGC
ATCAATAAGGGTCTGCAGGCTGCCCAGAAAGAGGCTCAAATTAAAGTCCTCGAGGGTCGACTCAAACAGA
CCGAAATCACCAGTGCAACCCAGAACCAACTCTTATTCCATATGCTGAAGGAGAAGGCAGAGCTAAACCC
AGAGCTGGATGCCTTGCTAGGCCACGCACTGCAAGATCTAGATGGCGCCCCACCAGAAAACGAGGAGGAC
AGCAGCGAGGAAGATGGCCCTTTACACAGCCCGGGGTCGGAGGGAAGCACGTTATCTTCAGACCTTATGA
AGCTTTGTGGTGAAGTGAAACCAAAGAACAAGGCTCGAAGGAGAACCACCACTCAGATGGAGTTGCTGTA
TGCAGATAGCAGTGAAGTAGCCTCAGACACTAGTGCAGGAGATGCCTCCTTGTCTGGCCCTCTGGCACCT
GTTGCAGAAGGGCAGGAGATTGGAATGAACACAGAGACAAGTGGTACTTCTGCTAGGGACAAAGAGCTTC
TTGCCCCATCTGGCTTACCTTCTAAGATAGGCAGCATTTCCAGACAGTCATCTCTATCAGAAAAAAAAGT
GCCAGAGCCTTCCCCTGTAACAAGGAGAAAGGCATATGAGAAGGCAGATAAACCAAAGGCGAAGGAACAT
AAACACTCAGATTCGGGCGCTTCCGAGACTAGTCTCTCACCTCCTTCCTCCCCACCAAGCCGGCCCCGTA
ACGAACTGAATGTGTTTAATCGCCTTACTGTGCCTCAGGGAACCCCGTCAGTTCAGCAGGATAAGTCTGA
TGAAAGTGACTCCTCTTTGTCCGAGGTGCACAGAGGCATAATCAACCCATTTCCTGCCTGCAAAGGAGTC
AGAGCCTCTCCTCTTCAGTGCGTTCACATAGCTGAAGGGCACACCAAGGCTGTGCTCTGTGTGGATTCTA
CGGATGATCTTCTCTTCACCGGATCAAAAGATCGCACTTGTAAAGTATGGAATCTCGTGACTGGACAGGA
AATTATGTCCCTGGGGGTTCACCCTAACAACGTGGTGTCTGTAAAATACTGTAATTATACCAGTCTGGTC
TTCACCGTGTCGACATCTTATATTAAGGTGTGGGATATCAGAGAGTCAGCAAAATGCATTCGAACATTAA
CATCTTCAGGTCAAGTTACCCTTGGAGAAGCGTGTTCTGCCAGCACCAGCCGGACAGTAGCTATTCCTTC
CGGGGAGAGCCAGATCAATCAAATTGCACTAAACCCAACTGGCACTTTCCTCTACGCGGCCTCTGGAAAT
GCCGTCAGAATGTGGGACCTTAAAAGGTTTCAGTCTACAGGAAAGCTAACCGGACACCTGGGTCCTGTTA
TGTGCCTTACGGTAGACCAGATCTCCAATGGACAGGACCTCATCATCACTGGCTCAAAAGACCACTACAT
CAAAATGTTCGATGTGACTGAAGGGGCTCTTGGAACTGTAAGTCCCACCCACAACTTCGAGCCTCCTCAT
TATGATGGGATAGAAGCACTGGCCATTCAAGGCGATAACCTATTCAGTGGGTCCAGAGATAATGGAATCA
AGAAATGGGACTTAGCTCAGAAAGGTCTTCTTCAGCAAGTCCCAAATGCACACAAAGACTGGGTGTGTGC
CCTGGGCCTGGTGCCAGGCCATCCGGTTTTGCTGAGTGGCTGCAGAGGCGGCATTCTGAAACTCTGGAAT
GTGGACACTTTTGTGCCCGTTGGAGAGATGAGAGGTCATGACAGTCCCATCAATGCCATTTGTGTTAACT
CCACCCATGTCTTTACTGCTGCTGATGATCGAACCGTGAGAATCTGGAAGGCCCACAACTTGCAAGATGG
TCAACTCTCTGACACCGGCGATCTGGGGGAGGATATTGCCAGTAATTAA

Translation (1672 aa):
MLGAADESSVRVAVRIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIE
KLIEGCFEGYNATVFAYGQTGAGKTYTMGTGFDVNIMEEEQGIISRAVRHLFKSIDEKKTSAIKNGLPPP
EFKVNAQFLELYNEEVLDLFDTTRDIDAKNKKSNIRIHEDSTGGIYTVGVTTRTVNTEPEMMQCLKLGAL
SRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQTDAENATDNKLISESSPMNEFETLTAKFHFVDLAGSER
LKRTGATGERAKEGISINCGLLALGNVISALGDKSKRATHVPYRDSKLTRLLQDSLGGNSQTIMIACVSP
SDRDFMETLNTLKYANRARNIKNKVMVNQDRASQQINALRSEITRLQMELMEYKTGKRIIDEEGVESIND
MFHENAMLQTENNNLRVRIKAMQETVDALRARITQLVSEQANQVLARAGEGNEEISNMIHSYIKEIEDLR
AKLLESEAVNENLRKNLTRATARSPYFSASSAFSPTILSSDKETIEIIDLAKKDLEKLKRKEKKKKKRLQ
KLEESGREERSVAGKDDNADTDQEKKEEKGVSEKENNELDVEENQEVSDHEDEEEEEEDEEEEDDIEGEE
SSDESDSESDEKANYQADLANITCEIAIKQKLIDELENSQKRLQTLKKQYEEKLMMLQHKIRDTQLERDQ
VLQNLGSVESYSEEKAKKVKCEYEKKLHAMNKELQRLQTAQKEHARLLKNQSQYEKQLKKLQQDVMEMKK
TKVRLMKQMKEEQEKARLTESRRNREIAQLKKDQRKRDHQLRLLEAQKRNQEVVLRRKTEEVTALRRQVR
PMSDKVAGKVTRKLSSSESPAPDTGSSAASGEADTSRPGTQQKMRIPVARVQALPTPTTNGTRKKYQRKG
FTGRVFTSKTARMKWQLLERRVTDIIMQKMTISNMEADMNRLLRQREELTKRREKLSKRREKIVKESGEG
DKSVANIIEEMESLTANIDYINDSIADCQANIMQMEEAKEEGETLDVTAVINACTLTEARYLLDHFLSMG
INKGLQAAQKEAQIKVLEGRLKQTEITSATQNQLLFHMLKEKAELNPELDALLGHALQDLDGAPPENEED
SSEEDGPLHSPGSEGSTLSSDLMKLCGEVKPKNKARRRTTTQMELLYADSSEVASDTSAGDASLSGPLAP
VAEGQEIGMNTETSGTSARDKELLAPSGLPSKIGSISRQSSLSEKKVPEPSPVTRRKAYEKADKPKAKEH
KHSDSGASETSLSPPSSPPSRPRNELNVFNRLTVPQGTPSVQQDKSDESDSSLSEVHRGIINPFPACKGV
RASPLQCVHIAEGHTKAVLCVDSTDDLLFTGSKDRTCKVWNLVTGQEIMSLGVHPNNVVSVKYCNYTSLV
FTVSTSYIKVWDIRESAKCIRTLTSSGQVTLGEACSASTSRTVAIPSGESQINQIALNPTGTFLYAASGN
AVRMWDLKRFQSTGKLTGHLGPVMCLTVDQISNGQDLIITGSKDHYIKMFDVTEGALGTVSPTHNFEPPH
YDGIEALAIQGDNLFSGSRDNGIKKWDLAQKGLLQQVPNAHKDWVCALGLVPGHPVLLSGCRGGILKLWN
VDTFVPVGEMRGHDSPINAICVNSTHVFTAADDRTVRIWKAHNLQDGQLSDTGDLGEDIASN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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