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Report for CCDS49534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49534.1 Public Mus musculus 14 Ccar2 23 108 98 CCDS HistoryNCBI Gene:219158Re-query CCDS DB by CCDS ID:49534.1Re-query CCDS DB by GeneID:219158See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035612.6 ENSMUSP00000036924.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035612.6Link to Ensembl Protein Viewer:ENSMUSP00000036924.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035612Re-query CCDS DB by Protein ID:ENSMUSP00000036924
Original member Current member NCBI NM_146055.3 NP_666167.3 Accepted alive Link to Nucleotide Sequence:NM_146055.3Link to Protein Sequence:NP_666167.3Re-query CCDS DB by Nucleotide ID:NM_146055Re-query CCDS DB by Protein ID:NP_666167Link to BLAST:NP_666167.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666167.3 922 Q8VDP4 922 100% 0 0

Chromosomal Locations for CCDS 49534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70138903 70138947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70139170 70139375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70139492 70139680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70139760 70139871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70139987 70140133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70140465 70140547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70140868 70141012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70141611 70141847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70141943 70142170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70142360 70142531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70142925 70143088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70143399 70143512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70143588 70143810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70145843 70145962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70151012 70151108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70151274 70151403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70151561 70151675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70151880 70151971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70152373 70152464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70152664 70152721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGTCCCAGTTTAAGCGGCAGAGGATCAACCCACTTCCAGGGGGACGCAACTTCTCAGGCGCAGCTTCAA
CATCTCTTTTGGGCCCTCCCCCTGGTCTACTTACTCCTCCTGTGGCCACAGACCTGTCCCAAAATGCCAG
GCACCTTCAGAGTGGGGAAAAGCAGCGAGTCTTCACAGGCATTGTTACCAGCTTGCATGACTACTTTGGG
GTGGTAGATGAAGAAGTCTTTTTTCAGCTAAGTGTGGTGAAGGGTCGACTGCCCCAGCTGGGGGAGAAGG
TGCTGGTGAAGGCCGCATACAACCCAGGCCAGGCCGTGCCCTGGAATGCTGTCAAGGTGCAGACGCTCTC
CAACCAGCCCTTACTGAAGTCTCCAGCGCCTCCCCTTCTGCACGTGGCAGCTCTGGGCCAGAAGCAAGGG
ATCCTGGGAGCTCAGCCCCAGCTGATCTTTCAGCCTCACCGAATTCCCCCCCTTTTCCCTCAGAAGCCTC
TGAGTCTCTTCCAGACATCCCACACACTTCACCTGAGCCACCTGAACAGATTTCCTGCTCGGGGTCCTCA
TGGAAGGCTGGACCAGGGCCGAAGTGATGACTATGACTCGAAGAAACGCAAACAGCGGGCTGGCGGAGAG
CCTTGGGGTGCTAAGAAACCTAGGCATGACCTGTCTCCTTACCGGGTTCATCTCACTCCCTATACTGTGG
ACAGTCCCACCTGTGACTTCCTAGAACTGCAGCGACGTTACCGCAGCCTGTTGGTCCCCTCAGATTTCCT
TTCCGTTCACTTGAGCTGGCTGTCAGCCTTCCCTCTGGGCCAGCCCTTTTCCCTCCACCACCCAAGTCGG
ATCCAGGTCTCTTCAGAGAAGGAGGCAGCTCCAGACACTGGTGCTGAGCCCAGCCCTGAGGACAGTGACC
CCACTTACAGTTCCAAGGTGCTGCTGCTCTCCTCCCCAGGCCTGGAGGAGTTCTATCGTTGCTGCATGCT
GTTTGTGGATGACATGGCTGAGCCAAGGGAGACACCAGAGCATCCTCTGAAGCAGCTAAAGTTTTTGCTG
GGCCGGAAAGAAGAAGAGGCAGTGCTGGTTGGGGGTGAGTGGTCTCCTTCCCTGGATGGCCTCGACCCCC
AGGCAGACCCGCAGGTGCTGGTGCGCACAGCCATCCGCTGTGCACAAGCCCAGACTGGCATTGACTTGAG
CACCTGCACCAAATGGTGGCGCTTTGCTGAGTTTCAGTACTTACAGCCGGGGCCGCCCCGGCAGTTACAC
ACAGTAGTGGTGTACCTGCCAGACGTGTGGACCATCATGCCCACTTTGGAGGAGTGGGAGGCACTGTGCC
AACAGAAAGCCACGGAGGCAGCTCCCCAACCACATGAGGCATCAGGGGAAGCAGAGGCTACTGAACAGGC
TCCTGATGTGTCAGAGCAAGCAGACACTTCTAAACAGAACACAGAGACAATGGAGGCCACCACACAGCAA
GATGTGGACACTGATCTCCCAGAGGCCCCTCCGCCTCCTCTAGAACCTGCTGTGATGGCCCGTCCTCGCT
GTGTCAACCTGTCTCTTTATGGAATTGTGGAGGATCGGAGGCCAAAAGAAAGGATCTCTTTTGAGGTAGT
GGTGCTGGCTGAGCTGTTTGTAGAGATGCTGCAGAGGGATTTTGGCTATAGAATTTATAAGACGCTGCTG
AGCCTTCCAGAAAAAGTTGTGTCTCCTCCTGAACCTGAGAAGGAGGAGGCAGCCAAAGAAGATGCGGTCA
AAGAGGAGGAGGCTGTCAAAGAGGAGGCAGTGAAGGTGTCCAAGGATGAGGTACAGAATGAGGGCACAGC
TGCCGAGTCAGACAGCCCACTGAAGGAGGATGGGCTTCTGCCCAAACGGCCCTCTTCAGGGGGAGAAGAG
GAGGAAAAGGCCCGGGGCGAGGCGGCTGAGGACCTCTGTGAGATGGCCTTGGACCCAGACCTGCTGCTGC
TGCGGGATGATGGAGAGGACGAATTTGCAGGAGCAAAGCTAGAGGAAACAGAGGTTCGTTCTGTTGCCTC
AAACCAGTCAGAGATGGAATATTCTTCTCTTCAGGACATGCCTAAGGAGCTGGATCCCTCAACTGTGCTC
CCCCTGGACTGTCTTTTGGCTTTTGTGTTTTTTGATGCCAACTGGTGTGGCTACTTGCACAGGCGAGACT
TGGAGAGGGTCCTCCTCACACTAGGGATCCGGCTCAGTGCAGAGCAGGCCAAACAGTTGGTTAGTAGAGT
GGTGGCACAGAACATCTGCCAGTACCGGAGCCTTCAGTACAGCCGTGCTGAAGTGCTGGACGATGGCCTT
CCTGAAGACGTGCTCTTCGGAAACCTGGATCTACTGCCTCCTTCAGGGAAGAGCACAAAGCCAGGTGCTG
CCCCCACAGAGCACAAAGGCCTGGTGCCCCACAATGGTAGCCTCATCAATGTGGGAAGCCTGTTACAGCG
TGCAGAGCAGCAAGACAGTGGCCGCCTATACCTGGAGAACAAGATTCACACACTGGAACTGAAGCTTGAG
GAGAGCCATAACCGCTTCTCAGCCACTGAGGTGACAAATAAGACACTGGCAGCAGAGATGCAGGAGCTGC
GGGCCCGGCTGGCCGAGGCAGAGGAGACGGCCCGGACAGCAGAGCGACAGAAGAACCAGCTCCAGCGACA
GATGCAGGACTTCCGCAGGCGCCTGACCCCACTGCACCTTGAGATGCAGCGGATTGTTGAGAAGGCTGAC
AGCTGGGTAGAGAAAGAAGAGCCAACGCCTAGCAACTGA

Translation (922 aa):
MSQFKRQRINPLPGGRNFSGAASTSLLGPPPGLLTPPVATDLSQNARHLQSGEKQRVFTGIVTSLHDYFG
VVDEEVFFQLSVVKGRLPQLGEKVLVKAAYNPGQAVPWNAVKVQTLSNQPLLKSPAPPLLHVAALGQKQG
ILGAQPQLIFQPHRIPPLFPQKPLSLFQTSHTLHLSHLNRFPARGPHGRLDQGRSDDYDSKKRKQRAGGE
PWGAKKPRHDLSPYRVHLTPYTVDSPTCDFLELQRRYRSLLVPSDFLSVHLSWLSAFPLGQPFSLHHPSR
IQVSSEKEAAPDTGAEPSPEDSDPTYSSKVLLLSSPGLEEFYRCCMLFVDDMAEPRETPEHPLKQLKFLL
GRKEEEAVLVGGEWSPSLDGLDPQADPQVLVRTAIRCAQAQTGIDLSTCTKWWRFAEFQYLQPGPPRQLH
TVVVYLPDVWTIMPTLEEWEALCQQKATEAAPQPHEASGEAEATEQAPDVSEQADTSKQNTETMEATTQQ
DVDTDLPEAPPPPLEPAVMARPRCVNLSLYGIVEDRRPKERISFEVVVLAELFVEMLQRDFGYRIYKTLL
SLPEKVVSPPEPEKEEAAKEDAVKEEEAVKEEAVKVSKDEVQNEGTAAESDSPLKEDGLLPKRPSSGGEE
EEKARGEAAEDLCEMALDPDLLLLRDDGEDEFAGAKLEETEVRSVASNQSEMEYSSLQDMPKELDPSTVL
PLDCLLAFVFFDANWCGYLHRRDLERVLLTLGIRLSAEQAKQLVSRVVAQNICQYRSLQYSRAEVLDDGL
PEDVLFGNLDLLPPSGKSTKPGAAPTEHKGLVPHNGSLINVGSLLQRAEQQDSGRLYLENKIHTLELKLE
ESHNRFSATEVTNKTLAAEMQELRARLAEAEETARTAERQKNQLQRQMQDFRRRLTPLHLEMQRIVEKAD
SWVEKEEPTPSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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