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Report for CCDS49497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49497.1 Public Mus musculus 14 Irf9 23 108 98 CCDS HistoryNCBI Gene:16391Re-query CCDS DB by CCDS ID:49497.1Re-query CCDS DB by GeneID:16391See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138037.1 ENSMUSP00000119477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138037.1Link to Ensembl Protein Viewer:ENSMUSP00000119477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138037Re-query CCDS DB by Protein ID:ENSMUSP00000119477
Original member Current member NCBI NM_001159418.1 NP_001152890.1 Accepted alive Link to Nucleotide Sequence:NM_001159418.1Link to Protein Sequence:NP_001152890.1Re-query CCDS DB by Nucleotide ID:NM_001159418Re-query CCDS DB by Protein ID:NP_001152890Link to BLAST:NP_001152890.1

Chromosomal Locations for CCDS 49497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55604669 55604721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55605052 55605232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55605721 55605904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606093 55606166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606318 55606438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55606537 55606608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55607514 55607855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55608685 55608800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55608921 55609031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTCTGAAACACTTCAACTTATCAAGACCAAATGTCTGAGGTTTCCTTTCAGGATGGCCTCAGGCAAAG
TACGCTGCACCCGAAAGCTGCGGAGCTGGATCGTGGAGCAGGTGGAGAGTGGCCATTTCCCAGGGGTGTG
CTGGGACGATGCAGCCAAGACCATGTTCCGGATTCCCTGGAAGCATGCAGGCAAGCAAGACTTCCGAGAG
GACCAGGATGCTGCCATATTCAAGGCTTGGGCACTGTTTAAGGAAAAGCACAAAGATGGGGACATAGGAC
ACCCCGCTGTCTGGAAGACTCGCCTACGCTGTGCCCTCAACAAGAGTTCCGAATTTGAGGAGGTTCCCGA
GAGAGGTCGTATGGATGTTGCTGAACCCTACAAAGTATATCGAATACTGCCAGCAGGAACCCTCCCTAAC
CAACCACGGAACCAGAAATCACCATGCAAGCGAAGTATCAGTTGTGTGTCACCTGAGAGGGAAGAAAATA
TGGAAAATGGGAGGACCAATGGCGTTGTAAACCACTCAGACAGTGGCAGCAACATAGGCGGTGGTGGCAA
TGGCAGCAACAGGAGCGACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGAGCTGGCACAACTGAG
GCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCATCAACTTCCTCTGAACTCAGACTACTCGCTGCTGC
TCACCTTCATCTATGGTGGCCGAGTGGTGGGTAAGACCCAGGTGCACAGCCTAGACTGTCGGCTCGTGGC
TGAGCGCTCAGACTCGGAGAGCAGCATGGAGCAGGTGGAGTTTCCCAAACCCGACCCACTGGAGCCTACC
CAGCACCTGCTGAATCAGCTTGACAGAGGCGTCCTGGTGGCCAGCAATTCCAGAGGCCTCTTTGTTCAGC
GCCTTTGCCCCATCCCCATCTCCTGGAATGCACCAGAGGCCCCACCCGGGCCTGGTCCTCATCTGCTGCC
CAGCAATAAGTGTGTGGAGCTCTTCAAGACCACCTACTTCTGTAGAGATTTGGCCCAGTACTTCCAGGGC
CAGGGGCCCCCACCCAAGTTCCAAGCAACCCTACATTTCTGGGAGGAGAGTCCTGGCTCTAGCCATAGCC
AAGAGAATCTCATCACAGTGCAGATGGAGCAGGCCTTTGCCCGACATTTACTGGAGAAGATTCCAGAAGA
GGAGAAAGCTGCCTTGTTCCTGTTACAGCACACAGAGCAGTCACCCTCTGCTCTGGGACACTGA

Translation (417 aa):
MSETLQLIKTKCLRFPFRMASGKVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFRE
DQDAAIFKAWALFKEKHKDGDIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTLPN
QPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHSDSGSNIGGGGNGSNRSDSNSNCNSELEEGAGTTE
ATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVVGKTQVHSLDCRLVAERSDSESSMEQVEFPKPDPLEPT
QHLLNQLDRGVLVASNSRGLFVQRLCPIPISWNAPEAPPGPGPHLLPSNKCVELFKTTYFCRDLAQYFQG
QGPPPKFQATLHFWEESPGSSHSQENLITVQMEQAFARHLLEKIPEEEKAALFLLQHTEQSPSALGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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