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Report for CCDS49490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49490.1 Public Mus musculus 14 Rpgrip1 23 108 98 CCDS HistoryNCBI Gene:77945Re-query CCDS DB by CCDS ID:49490.1Re-query CCDS DB by GeneID:77945See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111600.10 ENSMUSP00000107227.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111600.10Link to Ensembl Protein Viewer:ENSMUSP00000107227.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111600Re-query CCDS DB by Protein ID:ENSMUSP00000107227
Original member Current member NCBI NM_001168515.1 NP_001161987.1 Accepted alive Link to Nucleotide Sequence:NM_001168515.1Link to Protein Sequence:NP_001161987.1Re-query CCDS DB by Nucleotide ID:NM_001168515Re-query CCDS DB by Protein ID:NP_001161987Link to BLAST:NP_001161987.1

Chromosomal Locations for CCDS 49490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52112157 52112229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52114642 52114783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52119196 52119434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52120473 52120572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52120993 52121121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52126279 52126384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52129514 52129537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52131159 52131305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52133786 52133859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52136658 52136818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52138739 52138902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52140556 52140699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52141123 52141240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52145732 52145883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52147210 52147552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52149216 52149373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52149500 52149631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52149888 52150091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52150358 52150493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52152203 52152318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52156153 52156345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52158370 52158454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52159375 52159505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52160106 52160218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3384 nt):
ATGCAGCATCTACTAGAATATATGCCAGAGGATCTGCCAGTTAGAGACACAGATTCGAGTCCTCTGTTGA
AAGGGACGTCGGGTAAGAATGTAAGGGCCCAGCCGCACTTGGGCAGGATGAACCAGAAGGAGCTGAACTG
CAGACGCCTTCACCTCCATGAAGAGCCCACGTTGGTGAAGGAACCTTCTCCAAAGCAACGAGATAAAAAC
AGAAGGCGAAGGACGAACGTGCAGCGATCCACAACTACCCAACCGGACCTACGGACACTTGCTGTGCTCC
AGGAGCCAGAGAGGCGCAGGCGGCCGTGGGTCTCAGCGTCCCCGAGCCCCTCGGCGCCCCCGCGCGCACC
AGTTCCCGGGAGGAAAGCGCATGTGCAGCGCCTGTGTCCCTCGACCGCGGTAGGCAGTGCACAGCCTCGA
GTCCACGCGGGACGCAGACTGCCCCACATAGCTGGGCCAAATGACAGGCGCAGCCATACAGCCCCTCCCG
CATTTAAAGACTATGTGGCGGACAAGAACACCAGAATCGAAATAACCAGGGAGCCCAGCCAACTTACTCA
CACCATGACGACTGATTCTACACATGTGGAAGAGATCCCCAGATCTCCTGAGAAAACATCCAAAGTTGAA
AAGCCTGAACAGAGAAGCTCAGAGGAGTGCACTCAGAAGGCTGCAGAGCTTCGAGCTTCCATTAAGGAGA
ACGTGGAGCTGATTCGCCTTAAGAAGCTCTTACAGGAGAGGAATACCTCGCTGGCAGCCACAGAAGCCCA
ACTGACACGAGTTCAAGAGGCATATGAAGACTTGCTTCAAAAGAATCAGGGAATATTGGATACAGCCCAT
AATGCCTTCCTCAGCCAAGTGAATGAGCTCAAGGCAGAGCTGAGTGAAGAGAGCAAGAAGGCTGTGAGCT
TGAGGACTCAGCTGGGAGATGTGTCTATCTTGCAGATAACTCTGAAGGAGTTTCAGGTCAGAGTTGAAGA
TTTGGAAAAGGAACGGAAACTGCTGAGTGACAGTTATGACAGACTCTTAGAGAACATGCTGGATAGTAGT
CATCAGCCTCTGGATAGCAGTCATCAGCCTCACTGGAGCACGGAGCTCACAGGGAAGCAGCTCCCACCGC
AAGTCTGTCCACTGCTGGACCAAATGGGCACTGCGCTGGAGGAGACCAAAGTCTTTCGTCAAGCAACCAA
CAAAGCAGCTCAAGATGGAAAGCTGAAGTTTCAAGACACCGACATCCTTTACCAGCATGAACAGGAAGAA
GAGAGCCTTCAGTCAACTGCCACTGTAGCCTCATCTCCAGAAGAGCTGTGTGAACTGGCTGCTCAGCCCA
CTCTACTCCCACAGACAGATCAGAGAGAGTCCAGTGAACCAAAAGCTCAAGACGAGAATGACTTATCCCA
GGTGCTAAGCGAGCTGCAAGTGTCACATGCAGAGACCACACTGGAACTGGAAAAAACCAGAGATATGCTT
CTTCTGCAGCGCAAAATCAACATGTGTTATCAGGAGGAGCTGGAGGCAACACTGACAAAAGCTGACAGGG
AAAACAGGGACCACGAAGAGAAACTGGAGCGGCTGAATCACCTCCTGGACTTCAAGAACAGCCGCATCAA
ACAGCTGGAAGGAGCTGGTGGAGAAGACTTGGGGGTGTTAGAGTACTGGATGAGGCTGTGCCTGCCCCTA
AAACCCAGCCTCCAGGCATGCAATAAGCGAAAGAAAGCCCAGGCCTACCTGTCAGTCAGTGTGCTTGGAG
CTCGGAAGGTCCAGAGCAATGAGTCCAGATCCGAAACCTGGGCGCCTCAGAATGAGCTTCGGGTTGAGAT
CACCAGGTGCTGCGGCCTCCGGAGTCGACGGCTGGGAAGGCAGCCCAGTCCGTATGTCATGTACCGCTTC
TTCACCTTTCCTGACCATGACACCATCATCATTCCAGCCAGCAGCAATCCATACTTTAAAGACCAGGCTC
TGTTTCCCGTGCTTGTGACCTCTGACCTGGACCAGTATCTGAGGCGGGAAGCTCTGTCTGTCTATGTTTT
TGATGATGAAGACCCAGAGCCTGGCTCCTATCTTGGCCGAGCCCAGGTGCCCTTGCTGCCTCTTGCACAA
AACAAATCTATCAAAGGTGATTTCAATCTCACAGACTCTGGGGAGAAGTCCAATGGATCCATCAAAGTGC
AACTAGACTGGAAGTCTCACTACCTAGCCCCAGAGGGCTTCCAGATGTCAGAAGCTGAGAAGCCGGAGGG
TGAAGAGAAGGAGGAGGAAGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGACGAGAAGGAAGAGGAGGAA
GAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAGGATGAGAACAAAGATGTCCTGGAGGCCTCATTCACGG
AAGAATGGGTCCCCTTTTTTTCCCAGGACCAGATAGCATCTACAGAGATTCCCATAGAGGCTGGCCAGTA
CCCAGAGAAGAGAAAACCTCCTGTAATAGCAGAAAAGAAGGAAAGAGAGCATCAGGTCGCAAGCTACTCA
CGAAGAAAACACAGCAAAAAACCAGGTGTCCAAGACAAGAACAGAATGGAATATCTGAGCTGTAACATCT
TGAATGGAAACACACAGCAGATGCATTACACGGAGTGGAAGTTCTCAGGGCTCAAGAAGGCCGAGGATGG
TGGCTTAAAAGCTCAGGACAAGAGAGAGGAACCGCCATCACCCCGTTCAGCACTGAGACAGGAGCATCCC
TCACATCCTAGAAATGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACAAGCTTCTGAAGTCAGTGAAA
CACAGACTACCGACAGCGATGACATCATAGTGACACCCCAGGCTCAGACGGTTCCTAAAGCCGATTCAGA
GAAGATGTGCATTGAAATCGTCTCACTGGCCTTCTGCCCTGAGGCTGACGTCATGTCTGATGAGACTATC
CAGCAGGTATATGTGGAGTACAAATTCTGTGATCTGCCTCTATCGGAGACAGAGACTCCGATGTCCCTGA
GGAAACCAAGGGCAGGCGAAGAAATCCACTTCCACTTTAGCAAGGTGATAGATCTGGACCCTGTGGAGCA
CCAAAGCCGAAGGCAGTTTTTGTTTGCCATGCTACATGCTCAAGATTCTGATGAGGGACGTTTCAAGTTT
ACAGTGGTAAGTGATCCTCTGGATGAAGAAAAAAAAGAATGTCAAGATATAGGCTATGCATACCTTGAAC
TGTGGCAGATATTTCAATCTGGAAAAGATATCCTAGAGCAAGAACTAGAGATTGTGAGCCCTAGAAACCA
GGCCATCCAAATTGGAAGGCTGAAGGTTTCCCTCCAAGCAGCTGCTGCCCTCCATGGCATTTATAAGGAG
ATGACTGAAGATCTGTTTTCATGA

Translation (1127 aa):
MQHLLEYMPEDLPVRDTDSSPLLKGTSGKNVRAQPHLGRMNQKELNCRRLHLHEEPTLVKEPSPKQRDKN
RRRRTNVQRSTTTQPDLRTLAVLQEPERRRRPWVSASPSPSAPPRAPVPGRKAHVQRLCPSTAVGSAQPR
VHAGRRLPHIAGPNDRRSHTAPPAFKDYVADKNTRIEITREPSQLTHTMTTDSTHVEEIPRSPEKTSKVE
KPEQRSSEECTQKAAELRASIKENVELIRLKKLLQERNTSLAATEAQLTRVQEAYEDLLQKNQGILDTAH
NAFLSQVNELKAELSEESKKAVSLRTQLGDVSILQITLKEFQVRVEDLEKERKLLSDSYDRLLENMLDSS
HQPLDSSHQPHWSTELTGKQLPPQVCPLLDQMGTALEETKVFRQATNKAAQDGKLKFQDTDILYQHEQEE
ESLQSTATVASSPEELCELAAQPTLLPQTDQRESSEPKAQDENDLSQVLSELQVSHAETTLELEKTRDML
LLQRKINMCYQEELEATLTKADRENRDHEEKLERLNHLLDFKNSRIKQLEGAGGEDLGVLEYWMRLCLPL
KPSLQACNKRKKAQAYLSVSVLGARKVQSNESRSETWAPQNELRVEITRCCGLRSRRLGRQPSPYVMYRF
FTFPDHDTIIIPASSNPYFKDQALFPVLVTSDLDQYLRREALSVYVFDDEDPEPGSYLGRAQVPLLPLAQ
NKSIKGDFNLTDSGEKSNGSIKVQLDWKSHYLAPEGFQMSEAEKPEGEEKEEEGGEEEEEEEEDEKEEEE
EEEEEEEEEEEDENKDVLEASFTEEWVPFFSQDQIASTEIPIEAGQYPEKRKPPVIAEKKEREHQVASYS
RRKHSKKPGVQDKNRMEYLSCNILNGNTQQMHYTEWKFSGLKKAEDGGLKAQDKREEPPSPRSALRQEHP
SHPRNAFSLADQESCEQASEVSETQTTDSDDIIVTPQAQTVPKADSEKMCIEIVSLAFCPEADVMSDETI
QQVYVEYKFCDLPLSETETPMSLRKPRAGEEIHFHFSKVIDLDPVEHQSRRQFLFAMLHAQDSDEGRFKF
TVVSDPLDEEKKECQDIGYAYLELWQIFQSGKDILEQELEIVSPRNQAIQIGRLKVSLQAAAALHGIYKE
MTEDLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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