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Report for CCDS49444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49444.1 Public Mus musculus 14 Syt15 23 108 98 CCDS HistoryNCBI Gene:319508Re-query CCDS DB by CCDS ID:49444.1Re-query CCDS DB by GeneID:319508See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119693.7 ENSMUSP00000113725.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119693.7Link to Ensembl Protein Viewer:ENSMUSP00000113725.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119693Re-query CCDS DB by Protein ID:ENSMUSP00000113725
Original member Current member NCBI NM_176931.2 NP_795905.2 Accepted alive Link to Nucleotide Sequence:NM_176931.2Link to Protein Sequence:NP_795905.2Re-query CCDS DB by Nucleotide ID:NM_176931Re-query CCDS DB by Protein ID:NP_795905Link to BLAST:NP_795905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795905.2 389 Q8C6N3-2 389 100% 0 0

Chromosomal Locations for CCDS 49444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34220174 34220180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34220993 34221188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34221699 34221841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34222844 34223139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34224908 34225078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34226013 34226133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34227002 34227237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCAGAGCAGCTGGCCTTCCTGATAGGAGGCATCATTGGAGGGCTGCTTCTGCTGATCGGAGTGAGCT
GCTGTCTGTGGAGGAGGTTTTGCGCCACCTTCACCTATGAGGAACTGCCAGAGACGTCAGACCCGGCCAC
CATCTCTTACTTCAGCAGAAAAGAGGACAGGCTCTACCAGTATTCTGGGACCCCACCTGGCAGGCTACCA
AGTGTACCATTTGTGGTACCCCCTTCTCACCAAGGTCGAGACTGGGTGCCCCTACATGGTGGTGATTGGG
CTGTGGCCCCACAGGACCCCTGCCCTGTCCCAGAGCACATGGCCTGCACCTCCAGTGCCAAACCTGGAGA
TGCATGTGAGATGGGGAGCATCAACCCAGAGCTGTACAAGTCCCCGGAGGACACGAGTGAGACAGGCTTC
CCTGATGGCTGCCTGGGCCGGCTGTGGTTCTCGGTGGAGTACCAACAGGAGTCTGAGAGGCTGCTGGTGG
GCCTGATCAAGGCCCAGCAACTGCAAGTCCCCTCTGAGACCTGCAGCACCTTGGTGAAGCTCCACCTGCT
GCCTGATGAACGGCGCTTCCTCCAGTCCAAGACCAAACACAAAATTTGTAACCCACAGTTTGATGAGAAC
TTCATCTTCCAGGTATCCAGCAAAAGTGTCACCCAGAGAGTGCTGAAGTTCTCCGTGTACCATGTAAACA
AGAAGAGGAAGCACCAGCTCCTGGGACAGGTGCTATTCCCATTGAAGAATGAGACTCTGGCAGGGGACCA
CCACCGTATCATCTGGAGAGACCTGGAAGCTAAGAACCTGGAGCCCCCCTCGGAGTTTGGTGATATCCAG
TTCTGCCTCAGCTACAACGACTACCTGAGCCGCCTGACTGTGGTCGTGCTCCGAGCCAAGGGTCTCCAGC
TCCAGGAGGACAGAAGTGTTGTCAGTGTGTTTGTCAAGGTGTCTCTGATGAATCACAACAAATTCGTCAA
GTGCAAGAGGACTTCGGCTGTACTGGGCTCCGTCAACCCTGTGTACAATGAAACCTTCAGCTTCAAGGTT
GACACCAATGAGCTGGACACCGCCAGCCTTAGCCTGGTGGTGCTGCAGACCACAGAAGGGAACAGTAAGG
CCTGGGGAATGGGAAGCAGGGGACATGGTGTTGGGGCCACTCAATTGTAG

Translation (389 aa):
MAEQLAFLIGGIIGGLLLLIGVSCCLWRRFCATFTYEELPETSDPATISYFSRKEDRLYQYSGTPPGRLP
SVPFVVPPSHQGRDWVPLHGGDWAVAPQDPCPVPEHMACTSSAKPGDACEMGSINPELYKSPEDTSETGF
PDGCLGRLWFSVEYQQESERLLVGLIKAQQLQVPSETCSTLVKLHLLPDERRFLQSKTKHKICNPQFDEN
FIFQVSSKSVTQRVLKFSVYHVNKKRKHQLLGQVLFPLKNETLAGDHHRIIWRDLEAKNLEPPSEFGDIQ
FCLSYNDYLSRLTVVVLRAKGLQLQEDRSVVSVFVKVSLMNHNKFVKCKRTSAVLGSVNPVYNETFSFKV
DTNELDTASLSLVVLQTTEGNSKAWGMGSRGHGVGATQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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