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Report for CCDS49366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49366.1 Public Mus musculus 13 Ddx4 23 108 98 CCDS HistoryNCBI Gene:13206Re-query CCDS DB by CCDS ID:49366.1Re-query CCDS DB by GeneID:13206See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49366.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099166.9 ENSMUSP00000096769.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099166.9Link to Ensembl Protein Viewer:ENSMUSP00000096769.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099166Re-query CCDS DB by Protein ID:ENSMUSP00000096769
Original member Current member NCBI NM_001145885.1 NP_001139357.1 Accepted alive Link to Nucleotide Sequence:NM_001145885.1Link to Protein Sequence:NP_001139357.1Re-query CCDS DB by Nucleotide ID:NM_001145885Re-query CCDS DB by Protein ID:NP_001139357Link to BLAST:NP_001139357.1

Chromosomal Locations for CCDS 49366.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112598945 112599031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112599618 112599734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112599852 112600122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112601412 112601511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112604487 112604632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112611975 112612141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112613697 112613826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112620616 112620770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112621208 112621360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112622165 112622307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112622658 112622705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112622799 112622846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112624781 112624822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112625345 112625425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112626322 112626423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112628838 112628897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112633885 112633935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112635968 112636045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112641150 112641227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112644509 112644566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112651332 112651403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGGAGATGAAGATTGGGAGGCAGAAATACTCAAACCTCACGTGTCTTCCTATGTTCCTGTATTTGAGA
AGGATAAATATTCTTCTGGAGCAAATGGAGACACTTTTAACAGGACTTCAGCTTCATCAGAAATGGAAGA
TGGGCCTTCTGGAAGAGATGATTTCATGAGAAGTGGGTTTCCTTCTGGAAGAAGTTTAGGAAGCAGAGAT
ATTGGCGAGTCTAGTAAAAAAGAGAACACATCTACAACTGGTGGCTTTGGAAGAGGAAAGGGCTTTGGAA
ACAGAGGTTTTTTAAATAACAAGTTTGAAGAAGGTGATAGCTCTGGTTTCTGGAAAGAGTCTAATAATGA
CTGTGAAGATAATCAGACTCGAAGCAGAGGGTTTTCCAAGCGAGGTGGCTGCCAAGATGGAAACGATTCA
GAAGCATCAGGCCCGTTCAGAAGAGGGGGAAGAGGCAGTTTCCGAGGCTGCCGTGGAGGATTTGGTCTAG
GAAGACCAAATAGTGAATCTGACCAAGATCAGGGGACACAGCGTGGTGGTGGCCTTTTTGGTTCTAGGAA
ACCAGCAGCAAGTGATTCAGGCAATGGTGACACTTACCAAAGCAGAAGTGGAAGTGGTCGAGGTGGTTAC
AAAGGTTTAAATGAAGAAGTAGTAACAGGTTCTGGAAAGAATTCTTGGAAGTCAGAAACTGAAGGAGGTG
AAAGCAGTGATAGTCAAGGTCCAAAAGTGACATATATACCCCCTCCTCCACCAGAGGATGAGGACTCCAT
CTTTGCACATTATCAGACAGGCATAAACTTTGATAAATATGACACCATACTTGTTGAAGTATCTGGACAT
GATGCACCACCGGCAATTTTGACTTTTGAAGAAGCTAATCTCTGTCAGACACTGAATAACAACATTGCTA
AAGCTGGCTATACTAAGCTTACTCCTGTGCAGAAGTACAGCATTCCCATTGTATTAGCAGGACGAGATTT
GATGGCTTGTGCTCAAACAGGGTCTGGGAAGACTGCAGCTTTTCTCTTGCCTATTTTGGCTCATATGATG
CGGGATGGAATAACTGCCAGTCGCTTTAAAGAACTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTC
GAGAACTGATCAACCAAATTTACTTGGAAGCCAGAAAATTTTCTTTTGGGACTTGTGTAAGAGCTGTGGT
CATATATGGAGGAACCCAGTTTGGTCATTCAGTTCGACAGATAGTACAAGGGTGTAACATATTGTGTGCT
ACTCCAGGGAGGCTGATGGACATCATAGGCAAAGAAAAGATTGGCCTCAAACAAGTCAAGTACTTAGTTT
TGGATGAAGCTGATCGAATGTTGGATATGGGTTTTGGACCAGAGATGAAGAAACTAATTTCTTGTCCAGG
AATGCCATCAAAGGAACAACGCCAAACCCTTTTATTCAGTGCTACTTTTCCAGAAGAAATCCAGAGGTTG
GCTGGGGACTTTCTAAAGTCCAGTTACTTGTTTGTCGCTGTTGGGCAAGTGGGAGGAGCTTGCAGAGATG
TTCAGCAGACGATCCTTCAAGTTGGCCAGTATTCAAAAAGAGAAAAGCTTGTTGAGATTCTACGAAACAT
AGGTGATGAAAGAACTATGGTCTTTGTTGAAACCAAGAAAAAAGCCGATTTCATTGCAACTTTTCTTTGT
CAAGAAAAAATATCAACTACAAGTATTCATGGTGATCGGGAGCAGAGGGAGAGAGAGCAAGCTCTTGGAG
ATTTTCGCTGTGGAAAGTGCCCAGTTCTTGTTGCTACTTCAGTGGCTGCCAGAGGGCTTGATATTGAAAA
TGTTCAACATGTTATCAATTTTGACCTTCCTTCTACCATTGATGAGTATGTTCATCGAATTGGACGCACT
GGCCGCTGTGGAAATACTGGCAGAGCGATTTCTTTTTTTGATACTGACTCTGATAATCATTTAGCACAGC
CTCTAGTTAAAGTACTGTCAGACGCTCAACAGGATGTCCCCGCATGGCTAGAAGAGATTGCCTTCAGTAC
CTATGTGCCTCCCAGCTTCAGTAGCAGCACAAGAGGGGGGGCTGTGTTTGCATCTGTTGACACGAGGAAG
AATTACCAGGGCAAGCACACGTTGAATACAGCGGGGATTTCTTCTTCACAAGCTCCCAATCCAGTTGATG
ACGAGTCATGGGATTAA

Translation (728 aa):
MGDEDWEAEILKPHVSSYVPVFEKDKYSSGANGDTFNRTSASSEMEDGPSGRDDFMRSGFPSGRSLGSRD
IGESSKKENTSTTGGFGRGKGFGNRGFLNNKFEEGDSSGFWKESNNDCEDNQTRSRGFSKRGGCQDGNDS
EASGPFRRGGRGSFRGCRGGFGLGRPNSESDQDQGTQRGGGLFGSRKPAASDSGNGDTYQSRSGSGRGGY
KGLNEEVVTGSGKNSWKSETEGGESSDSQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH
DAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMM
RDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCA
TPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRL
AGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLC
QEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT
GRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRGGAVFASVDTRK
NYQGKHTLNTAGISSSQAPNPVDDESWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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