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Report for CCDS49262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49262.1 Public Mus musculus 13 Spata31e3 23 108 98 CCDS HistoryNCBI Gene:380882Re-query CCDS DB by CCDS ID:49262.1Re-query CCDS DB by GeneID:380882See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099521.1 ENSMUSP00000097121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099521.1Link to Ensembl Protein Viewer:ENSMUSP00000097121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099521Re-query CCDS DB by Protein ID:ENSMUSP00000097121
Original member Current member NCBI NM_001033438.2 NP_001028610.1 Accepted alive Link to Nucleotide Sequence:NM_001033438.2Link to Protein Sequence:NP_001028610.1Re-query CCDS DB by Nucleotide ID:NM_001033438Re-query CCDS DB by Protein ID:NP_001028610Link to BLAST:NP_001028610.1

Chromosomal Locations for CCDS 49262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 50245235 50247989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50248210 50248270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50248797 50248848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50250079 50250264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3054 nt):
ATGGAGAATTTTCTCTCTCTGATGAATAGCATTATCGATTCATGGATGAGCAACAGCTCCATGGACATAG
CAATGGACATGACCATTGGCTTTATGTGTGGAGTTGGGCTCTTTTTCCTACTTATCCCCTTCCTGAAGGA
GTACCCAGTGTCACCAGCATCTGAGAATGAATGGAGCAAACCACAGGATGTGAAGAGGTGGCAGAAGAAG
ACCAGTAAGAAAACAGCTACTGGAAAAGGTTGTACAGATGGAGGAAAAAATGCAGAAGAGACCAAGACAC
CATCACAACCTATGGAAATCCCCAACAAGCAACGTTACAAAAATCTTAGTCGATTTTTCTGGGGTACATA
CTCTATTAACTCTGAATCAGTTGTGGCTACTGTCCATGAGCTCAGAAGCCCTTCCTTGGGAAAATGTAAA
TCTGTGAGGTTTAGTGATGACAGTGGCCCTGACAAAGCTCCATCCAAGGCTAAAGGACTTCCACAGCATT
CCCAGCATCAGCCATTACCTCACCACCGTGTGATACCAAACTTGGTAGATGAGAAACAAGTCCAAGAAAA
GAAAATCCTCACAAAATCTACCCGAAAACAAACACCACCTTGTTTCAAAAGTAGGACCTATGTGGTGCCA
CATCCCACCACTGAGAGAAGGAAACAGGCATCCCTACCAGCTGGAAGCCTGCCTGGGAAACATGGACCAT
ATTCAAAAGAAACCAAAGATTATGATGAGCGAAAACATCAAAAAGCTATTAGCAAGCCCACTGACAACTT
GCGCTGGGACACCCTGCATTGTAAAGCTATCAGTCCAGTCATCATCCATCCTGAGCATTGCCAGAGGCTC
CAGCTCCATAAGGAGCCAGAGAATAACGAAAAGACAACTAGAGTCAAAGAACAACAAGGAACCCCATTCA
GATTCCTCCCCTACAGGAAACCGACCCATGTACAGGAACATTTCCCAGCAAACACTGTTCATTATTGCAA
GAACAGGCCTCAACTCTCCCAGCCTGCCCAGGCCTCCATCTTCAACACCAAACCCTACAAATGTAGTAAA
TGGAAGGGGTCTGTGCCTACAGGGCTGCCCTTAAAGAAGGACATAGCAAAGTCTGATATGCATAACACCA
TCAAGAAGGACCTTGGTGTGGGGGCACAAAAGGTGCCTGGCACTGCAAGCAGCAGCCCTGGGAAGGAGGT
GAGACCCAAGAAACCTGCACTGAGGACAGAGAAGGTGTCCTCCATGAAACCTGCTGGGCACTATTCCCTG
CCTGAGGCAAAGACAGCATCAAATTTCACAGAGCTTCCAGTGAAACAAAGGAGACCATATCTGCAGATGC
TTGTGGCAAGGGATCTGACCCCACCTGGAGTTCCAGCCTCAAACCTCCCCCAGGTTGTGTATCCCTCCTC
GCCCATCTGCAATTCCAAGGCTGCCAGGGTCCTGGAAAAATTGCATCACCAGGATCCAGGAGGGACAAGG
ATAAAAAGTGCATCAGTTGCGAGGCCAGAGAGAGCTGAGTTTATACACTCACTTCCAGAGGCTCAGGAGA
CCCACAGAGCCCCTCCATTTGCTGCCAGCCATGGGGCCACAAAGTCTCATCTAGATCCATTGCCAAGATA
CCTGAGTGTTCAGAGACCTGCTTGCTACTTCCAGGCAGCAAATCCCCAACAGATCAGGACTCTCTGGGGC
ACTGGAAAAGGCAGTCTGAAGCCAAGTACCAATCTCAAAATGGCCAAGCATGCACCACAGAAGAACTTTC
AGGAGGTGGACTCACGACATCGCCCATGGTGTATGACAATGGAAGGCCCTGGACAAAGGGTCCTACCTTC
AGGAGCCAAACAAACTACAGTGGAGGTGAAAGAAGAGCCACCTCATGCATGGAGAGTGAGTCTGGGATCC
AGTGAGAGTCACATTGGTAAGCATATCGATATCAGACCCAGGGACTTTGGGTCATTATGGGCCAACAGAC
TCCCAGCCCATCTACAAATACCTACCTCCCAACACTCACAGGACTCAAGTGAGAGTATTTTTAGTTCAAA
CCACCAGCCAAGAGCCTGGCCTGTGAGTCACCATCCAGTTGGCCCCAGTAGAGTCATCCCTGCTGATGTC
AACTTGCCTTCAAAGGACTCTCTGCCCAGTTTCCAGAATACAGTCCAAAACACCAAGCCTTCCCAGGGCT
TATGCGATGTCCTCATGAGGAGACACCAGAGGAGTGATACTCAAGAGAACAGGGTCCTAGCTGATAAGAT
CAAAGTTTGTGATCATGATGGGGTCCATCCCCATGTAGAGAGCCAGAGTATAAAATCTAGGGCCATACGC
CTGGCAGAAAGGCTTGAAGAAATAAGGCCTTCGATCCTGAGCTCCATAAAGCTCAAGGATACAGCCAAGT
CTAGGATAGCAGAAAAAGGAGAGGCTACTTCTAATACCTCTCGGAAGAACACCTTACTTAATAATTTACT
AGAAAGAAACCTCAGCAAAAAATACAGTGAGCAAGGGGATTCTTTAAGGATTGATCAACCCACACCAGCT
GCTGAGCAGACAAAAGTCTTAACCATTAAAATGGTCATCTACAGAATGATAGCTGCACTGAAATCCCTTG
TGGATGTTCTGTTCCAGATCTTGGAGGACAGTGAAGGGGACACATCAGAGGTACAAGGGAGTGAAGTGGA
ATCACTGACAACCCAGCTGACATCCCACTCTTCTGAGAGTCTGTATGACACAAACTATAGCAGACCAGCA
AGCAGGCGGAGCTGTGGCCATTCCACCTCTGAGATGCATAACTATTCTTTGACATATAGAAGAATGGGAG
ACAAATTGCAGTCAGGGATTAAAGCCCAAAGAGCCTGTGACCCATATATGAACCAAGAGATGAGAGGGAT
GTGCTTTGACCAGCTCCACATGCCCAAGGGGAAAGAACTTCCATGTGAGTACAGGAGAAATGGAGCCAAG
CAGGAGCCAGGTCTTGTTGCCCAGCAAGCCTCTGACTCTAGGTATACCTTGCAGAATAGGTTAAGGAGCA
GGTGGCTCAGGCCATCCATGCCTTCCCACACCAGGATCTTCTAG

Translation (1017 aa):
MENFLSLMNSIIDSWMSNSSMDIAMDMTIGFMCGVGLFFLLIPFLKEYPVSPASENEWSKPQDVKRWQKK
TSKKTATGKGCTDGGKNAEETKTPSQPMEIPNKQRYKNLSRFFWGTYSINSESVVATVHELRSPSLGKCK
SVRFSDDSGPDKAPSKAKGLPQHSQHQPLPHHRVIPNLVDEKQVQEKKILTKSTRKQTPPCFKSRTYVVP
HPTTERRKQASLPAGSLPGKHGPYSKETKDYDERKHQKAISKPTDNLRWDTLHCKAISPVIIHPEHCQRL
QLHKEPENNEKTTRVKEQQGTPFRFLPYRKPTHVQEHFPANTVHYCKNRPQLSQPAQASIFNTKPYKCSK
WKGSVPTGLPLKKDIAKSDMHNTIKKDLGVGAQKVPGTASSSPGKEVRPKKPALRTEKVSSMKPAGHYSL
PEAKTASNFTELPVKQRRPYLQMLVARDLTPPGVPASNLPQVVYPSSPICNSKAARVLEKLHHQDPGGTR
IKSASVARPERAEFIHSLPEAQETHRAPPFAASHGATKSHLDPLPRYLSVQRPACYFQAANPQQIRTLWG
TGKGSLKPSTNLKMAKHAPQKNFQEVDSRHRPWCMTMEGPGQRVLPSGAKQTTVEVKEEPPHAWRVSLGS
SESHIGKHIDIRPRDFGSLWANRLPAHLQIPTSQHSQDSSESIFSSNHQPRAWPVSHHPVGPSRVIPADV
NLPSKDSLPSFQNTVQNTKPSQGLCDVLMRRHQRSDTQENRVLADKIKVCDHDGVHPHVESQSIKSRAIR
LAERLEEIRPSILSSIKLKDTAKSRIAEKGEATSNTSRKNTLLNNLLERNLSKKYSEQGDSLRIDQPTPA
AEQTKVLTIKMVIYRMIAALKSLVDVLFQILEDSEGDTSEVQGSEVESLTTQLTSHSSESLYDTNYSRPA
SRRSCGHSTSEMHNYSLTYRRMGDKLQSGIKAQRACDPYMNQEMRGMCFDQLHMPKGKELPCEYRRNGAK
QEPGLVAQQASDSRYTLQNRLRSRWLRPSMPSHTRIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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