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Report for CCDS49198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49198.1 Public Mus musculus 12 Abcb5 23 108 98 CCDS HistoryNCBI Gene:77706Re-query CCDS DB by CCDS ID:49198.1Re-query CCDS DB by GeneID:77706See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035515.4 ENSMUSP00000046177.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035515.4Link to Ensembl Protein Viewer:ENSMUSP00000046177.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035515Re-query CCDS DB by Protein ID:ENSMUSP00000046177
Original member Current member NCBI NM_029961.2 NP_084237.1 Accepted alive Link to Nucleotide Sequence:NM_029961.2Link to Protein Sequence:NP_084237.1Re-query CCDS DB by Nucleotide ID:NM_029961Re-query CCDS DB by Protein ID:NP_084237Link to BLAST:NP_084237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084237.1 1255 B5X0E4-1 1255 100% 0 0

Chromosomal Locations for CCDS 49198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118867848 118868036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118868659 118868805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118872743 118872949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118874601 118874798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118877682 118877838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118886157 118886297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118887108 118887208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118890551 118890754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118901357 118901440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118905943 118906020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118906160 118906264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118907506 118907649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118911423 118911563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118918121 118918282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118919822 118919992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118927222 118927425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118928688 118928813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118931851 118931961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118932495 118932608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118935947 118936124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118936208 118936332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118940288 118940459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118940545 118940736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118944891 118944945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118950084 118950234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118952469 118952526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118965262 118965314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3768 nt):
ATGGCAAATTCTGAAAGAACCAACGGGTTGCAAGAAACTAATCAGAGATATGGACCTCTGCAAGAACAAG
TGCCTAAAGTGGGAAATCAAGCTGTTGGACCTATTGAGATATTCCGCTTTGCTGATAATCTGGACATTGT
CCTCATGACTCTGGGAATATTAGCATCCATGATAAATGGAGCCACCGTTCCTTTAATGTCCCTGGTTTTA
GGAGAAATAAGTGATCATTTAATTAATGGATGCCTAGTACAAACTAACAGAACTAAATATCAGAACTGTT
CTCAGACTCAAGAAAAGCTGAATGAAGATATCATTGTGTTGACTCTATATTATATTGGAATAGGAGCAGC
TGCCCTCATTTTTGGCTATGTACAGATTTCCTTCTGGGTCATAACTGCAGCCCGGCAAACCACAAGAATC
CGAAAACAGTTTTTTCATTCAATTTTGGCACAAGACATCAGCTGGTTTGATGGCAGTGACATCTGTGAAC
TTAACACCCGCATGACTGGTGACATCAACAAACTCTGTGATGGTATTGGAGATAAGATCCCTCTGATGTT
TCAGAACATATCTGGGTTTTCTATTGGCCTGGTGATAAGTTTGATAAAAAGCTGGAAACTCTCCCTGGTG
GTTCTGTCTACATCTCCTCTCATAATGGCTTCATCGGCACTGTGCTCTAGGATGATTATCTCATTGACCA
GCAAGGAGCTGGATGCCTATTCCAAAGCTGGGGCTGTGGCTGAAGAAGCCTTGTCATCAATCCAAACAGT
CACAGCCTTTGGAGCCCAAGAGAAAGAAATTCAAAGGTATACACAGCACTTAAAGGACGCAAAGGACGCT
GGCATAAAGAGGGCTACGGCTTCAAAGCTGTCTCTTGGAGCAGTCTACTTCTTTATGAATGGAGCCTATG
GACTGGCTTTTTGGTATGGAACCTCCTTGATTTTTGGCGGAGAGCCTGGTTACACCATCGGAACTATTCT
TGCTGTTTTCTTCAGTGTGATCCATAGTAGTTACTGCATTGGATCTGTAGCCCCTCACCTGGAAACCTTC
ACAGTAGCCAGAGGAGCTGCCTTTAATATTTTCCAGGTTATTGATAAGAAACCCAATATAGATAACTTTT
CAACAGCTGGATTTGTACCTGAATGTATAGAAGGAAACATAGAATTTAAAAATGTTTCTTTCAGCTATCC
ATCAAGACCTTCTGCCAAGGTTCTGAAAGGTCTCAATCTGAAGATTAAGGCTGGAGAGACAGTAGCCTTG
GTTGGTCCCAGTGGCAGTGGCAAGAGTACGACAGTGCAGCTTCTGCAGAGGCTGTATGACCCAGAGGACG
GCTGTATCACCGTAGATGAGAATGACATCCGAGCCCAAAACGTGCGACATTACCGAGAGCAAATTGGAGT
GGTCAGACAAGAGCCAGTTCTGTTTGGGACCACCATCGGTAACAATATTAAGTTTGGGCGCGAAGGTGTG
GGTGAAAAGGAAATGGAACAGGCAGCGAGGGAGGCAAACGCCTACGACTTCATAATGGCCTTTCCTAAGA
AATTTAATACACTAGTAGGGGAAAAAGGAGCTCAAATGAGTGGAGGCCAGAAACAGAGGATTGCCATTGC
TCGAGCGCTAGTTCGAAACCCCAAAATTCTGATCTTAGATGAGGCTACATCTGCCCTGGACACAGAGAGT
GAATCACTTGTTCAAACTGCACTGGAGAAGGCAAGCAAAGGCCGGACTACAATTGTGGTAGCACACAGGC
TCTCCACCATTCGTGGGGCAGACCTGATTGTGACAATGAAGGATGGCATGGTGGTGGAGAAAGGGACCCA
TGCTGAACTAATGGCAAAGCAGGGGCTGTACTACTCCCTCGCCATGGCACAGGATATTAAAAAGGTCGAT
GAACAAATGGAATCAAGGACATGTTCCACTGCAGGAAATGCCAGCTATGGTTCTCTGTGCGATGTGAATA
GTGCCAAGGCCCCCTGCACTGACCAGCTGGAGGAAGCCGTACACCATCAAAAGACAAGTCTTCCTGAAGT
TTCACTATTAAAAATATTTAAATTAAGCAAGTCTGAATGGCCTTTTGTGGTTCTGGGAACACTGGCTTCT
GCTTTAAATGGATCTGTTCATCCAGTATTTTCCATCATCTTTGGAAAATTAGTCACTATGTTTGAAGATA
AAAATAAAGCTACATTAAAGCAGGATGCAGAGCTCTACTCCATGATGTTAGTCGTCTTGGGCATAGTAGC
TCTTGTCACCTACTTGATGCAGGGATTGTTTTATGGCAGAGCAGAGGAAAATTTAGCCATGAGATTAAGA
CACTCGGCATTCAAAGCCATGCTCTACCAGGATATGGCCTGGTATGATGATAAAGAGAACAACACTGGAG
CCCTGACCACAACGTTAGCTGTGGATGTAGCACAGATTCAGGGTGCAGCAACTTCAAGACTTGGGATCGT
AACACAAGATGTGAGCAACATGAGTCTGTCCATTCTCATCTCCTTCATATATGGATGGGAGATGACACTC
CTGATTCTCAGCTTCGCGCCTGTACTTGCGGTGACAGGAATGATTCAAACCGCAGCAATGGCTGGCTTTG
CCAACAGGGATAAGCAGGCGCTCAAGCGTGCTGGAAAGATAGCAACAGAAGCTGTGGAGAACATACGTAC
GGTAGTGTCATTAACAAGAGAGAGAGCCTTTGAGCAAATGTATGAGGAGACACTTCAGACTCAACACAGA
AACGCCTTGAAGAGAGCACACATCACTGGATGCTGTTATGCAGTCAGCCATGCTTTTGTGCATTTTGCCC
ATGCAGCAGGGTTCCGATTTGGAGCCTATTTGATTCAAGCAGGACGGATGATGCCGGAAGGCATGTTCAT
AGTCTTTACCGCCATTGCATATGGGGCTATGGCCATTGGAGAAACACTTGTATGGGCTCCTGAATATTCC
AAAGCCAAAGCTGGAGCTTCGCATCTGTTTGCTTTGCTGAAAAATAAACCAACTATAAACAGCTGCAGTC
AAAGTGGGGAAAAACCAGACACCTGTGAAGGGAACTTAGAATTTCGAGAGGTCTCTTTCGTCTATCCTTG
TCGTCCAGAAGTTCCTGTCCTTCAGAACATGTCCCTCAGCATTGAGAAAGGGAAGACTGTAGCATTCGTT
GGGAGCAGCGGCTGTGGAAAAAGCACATGTGTTCAACTGCTGCAAAGATTTTATGACCCCATGAAAGGAC
AAGTGCTGCTTGACGGAGTTGATGTAAAAGAATTGAACGTGCAGTGGCTGCGTTCCCAGACAGCCATCGT
CTCCCAAGAGCCTGTGCTGTTCAACTGTAGCATCGCTGAGAACATTGCCTATGGTGATAACAGCCGCATG
GTGCCCTTAGAGGAGATCAAAGAGGTCGCAGATGCAGCCAACATTCATTCTTTCATTGAAGGGCTCCCAA
GGAAATACAACACCCTAGTGGGACTAAGAGGCGTGCAGCTTTCTGGCGGCCAGAAACAAAGACTGGCTAT
TGCAAGGGCTCTTCTCCGGAAGCCAAAAATTTTACTGCTGGATGAGGCCACTTCAGCCCTTGATAATGAG
AGTGAGAAGGTGGTCCAACAGGCTCTTGATAAAGCCCGGAGAGGGAAGACCTGCCTAGTGGTGGCTCACA
GACTCTCTACAATACAGAATGCAGATATGATCGTTGTTCTGCAAAATGGAAGCATCAAGGAGCAGGGAAC
TCATCAGGAGCTCCTGAGAAATGGAGATACATACTTTAAATTAGTAGCTGCACATTAG

Translation (1255 aa):
MANSERTNGLQETNQRYGPLQEQVPKVGNQAVGPIEIFRFADNLDIVLMTLGILASMINGATVPLMSLVL
GEISDHLINGCLVQTNRTKYQNCSQTQEKLNEDIIVLTLYYIGIGAAALIFGYVQISFWVITAARQTTRI
RKQFFHSILAQDISWFDGSDICELNTRMTGDINKLCDGIGDKIPLMFQNISGFSIGLVISLIKSWKLSLV
VLSTSPLIMASSALCSRMIISLTSKELDAYSKAGAVAEEALSSIQTVTAFGAQEKEIQRYTQHLKDAKDA
GIKRATASKLSLGAVYFFMNGAYGLAFWYGTSLIFGGEPGYTIGTILAVFFSVIHSSYCIGSVAPHLETF
TVARGAAFNIFQVIDKKPNIDNFSTAGFVPECIEGNIEFKNVSFSYPSRPSAKVLKGLNLKIKAGETVAL
VGPSGSGKSTTVQLLQRLYDPEDGCITVDENDIRAQNVRHYREQIGVVRQEPVLFGTTIGNNIKFGREGV
GEKEMEQAAREANAYDFIMAFPKKFNTLVGEKGAQMSGGQKQRIAIARALVRNPKILILDEATSALDTES
ESLVQTALEKASKGRTTIVVAHRLSTIRGADLIVTMKDGMVVEKGTHAELMAKQGLYYSLAMAQDIKKVD
EQMESRTCSTAGNASYGSLCDVNSAKAPCTDQLEEAVHHQKTSLPEVSLLKIFKLSKSEWPFVVLGTLAS
ALNGSVHPVFSIIFGKLVTMFEDKNKATLKQDAELYSMMLVVLGIVALVTYLMQGLFYGRAEENLAMRLR
HSAFKAMLYQDMAWYDDKENNTGALTTTLAVDVAQIQGAATSRLGIVTQDVSNMSLSILISFIYGWEMTL
LILSFAPVLAVTGMIQTAAMAGFANRDKQALKRAGKIATEAVENIRTVVSLTRERAFEQMYEETLQTQHR
NALKRAHITGCCYAVSHAFVHFAHAAGFRFGAYLIQAGRMMPEGMFIVFTAIAYGAMAIGETLVWAPEYS
KAKAGASHLFALLKNKPTINSCSQSGEKPDTCEGNLEFREVSFVYPCRPEVPVLQNMSLSIEKGKTVAFV
GSSGCGKSTCVQLLQRFYDPMKGQVLLDGVDVKELNVQWLRSQTAIVSQEPVLFNCSIAENIAYGDNSRM
VPLEEIKEVADAANIHSFIEGLPRKYNTLVGLRGVQLSGGQKQRLAIARALLRKPKILLLDEATSALDNE
SEKVVQQALDKARRGKTCLVVAHRLSTIQNADMIVVLQNGSIKEQGTHQELLRNGDTYFKLVAAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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