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Report for CCDS49152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49152.1 Public Mus musculus 12 Ddx24 23 108 98 CCDS HistoryNCBI Gene:27225Re-query CCDS DB by CCDS ID:49152.1Re-query CCDS DB by GeneID:27225See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110001.3 ENSMUSP00000105628.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110001.3Link to Ensembl Protein Viewer:ENSMUSP00000105628.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110001Re-query CCDS DB by Protein ID:ENSMUSP00000105628
Original member Current member NCBI NM_001159502.2 NP_001152974.1 Accepted alive Link to Nucleotide Sequence:NM_001159502.2Link to Protein Sequence:NP_001152974.1Re-query CCDS DB by Nucleotide ID:NM_001159502Re-query CCDS DB by Protein ID:NP_001152974Link to BLAST:NP_001152974.1

Chromosomal Locations for CCDS 49152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103408212 103408477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103409928 103410057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103411129 103411317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103416196 103416271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103417278 103417793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103418064 103418217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103418962 103419483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103423872 103424597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103425526 103425658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGCTTTGCTGTGGGCATCAAGGCCCGGCAACCTCCCTTGAAGCCCTCGTGGGACTCTGGCAGAAGGCAC
AGGTCACTCCCCCGCGCCCTATTTCTAGTGACGTTCCCTTCACCTTGTCAAGGTGGGGCCGAGCAACCAT
GAAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTGGCACGTTCCAGAGGAAGGGCATCAAG
ATTGTGGGGAAATGGAAGCAAGTGACGATCGACCCGAATCTGTTTGCAGATGGACAGATGGATGACCTGG
TGTGCTTTGAAGAGCTGACAGATTACCGTTTAGTCAAGAATCCCTCCCGTTTGTTCTCAAGTGAGGAGAC
AAAGAAGAGAAAGGCCCAGGCTGTTTCAGAAGAGGAAGAAGAGGAGGAAGGACAGTCCAGCTCCCCAAAG
AAAAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACGAGCTGCCGAAGGCGCTGCTGCCCAGAATGAGT
ATGAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGCTTGTTCTGATCAAAAGGTCGGAGG
AGCCAAATCAGAAAGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAACAAAGGGAAAAAAAAATTGGAT
ACTTTTCAGAGCACTTCCCCCAAATTGCCCAAAAAATCGAAGAAGACATGGATGGCTGAGGTGCACGACC
AGAAGGCAGATGTGTCTGCCTGGAGGGACCTGTTTGTGCCCAAGGCTGTTCTGCGCGCTCTCAGCTTCTT
AGGCTTCTCTGCACCTACCCCAATCCAGGCTCTGACTTTGGCCCCTGCCATCCGTGACAAACTGGACATC
CTTGGAGCTGCTGAGACAGGAAGCGGGAAAACTCTGGCTTTTGCCATCCCGATGATTCACTCAGTGCTGC
AGTGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTTGG
AGCTACAGCCCATCTTGGATCACCTTGCAAGGACAGAACTGAATCTGGAGTGTTGCCTGAGGAGGCCAGA
ATTGAGACTGAAGCACAGCCCAGTGACTCTGGGGTCCAGGCCACACCTGAGACTAGTGCCTCTGCCTCAG
CCCAGACACTGCTCGTCTGTGATGATGATGCTGGTGAAGGACCTTCTTCCTTAGAGGAAAAGCCTGTCCC
CAAGCAAAATGAGGACGGAGAAGAAAAGTTTGATGCAGAACAGGCTGGAAAGTTAAAACAGGAGTTATGT
GACCAAATTGCTATTTATAAAGTACACCCAAGGCGCCCTCTGCTTGGACTGGTGCTGACTCCTACTCGAG
AGCTGGCCATCCAGGTCAGACAGCACATCGATGCTGTGGCCAAGTTTACAGGGATTAATACAGCAATTTT
AGTTGGTGGAATGTCCACACAGAAACAGCAAAGGATGCTGAACCGCCATCCTGAGATTGTGATCGCCACC
CCTGGTCGGCTCTGGGAGTTAGTTAAAGAAAAACACCCTCATTTGAGTAACCTTCGGCAGCTCAGGTGCC
TGGTCATAGATGAAGCTGATCGCATGGTTGAGAAAGGCCATTTTGCTGAACTCTCTCAGCTGCTAGAGAT
GCTAAATGACTCCCAGTACAACCCCAGTCGGCAGACTCTTGTTTTTTCTGCCACCCTAACCCTGGTACAC
CAAGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAAGAAGATGGATAAAACCGACAAACTTGACCTTC
TCATGCAGAAGGTTGGCATGAGGGGCAAGCCGAAAGTCATTGACCTCACAAGGAACGAGGGTACAGTGGA
GACGCTAACGGAGACCAAGATCCACTGCGAGACAGATGAGAAAGACTTGTATCTCTACTACTTTCTCATG
CAGTACCCAGGTCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCTCCTCA
AGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGA
GCAGTTTGCTCGTCTGCAAGACTGTGTTCTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGATATTCCT
AAAGTTCAACATGTCATCCATTACCAGGTGCCTCGCACCTCAGAGATTTACATCCACCGAAGTGGTCGGA
CTGCCCGCGCTGCCAGTGAAGGCCTCAGCTTGATGCTGATTGGGCCTGAGGATGTGATCAACTTCAAGAA
GATCTACAAAACTCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATGTG
GTCAAGGAGCGGATCCGTCTAGCCCGACAGATTGAAAAAGCTGAATACCGGAACTTCCAGGCTTGTCTGC
ACAACTCATGGATTGAGCAGGCGGCAGCAGCCCTAGAGATTGAGCTAGAAGAAGAGATGTACAAAGGAGG
AAAAGCTGACCAGCAAGAAGAACGTCGGCGACAGAAGCAGATGAAGATGCTGAAGCAGGAGCTACGCCAT
CTGCTCTCCCAGCCACTCTTCCAGGAGAACCTGAAGACCAGATACCCCACACAGTCTGGCAGGCCGCCTC
AGCCTGTGCTGGCCTCCAGGAATATCGAGTCTGCGCTGAGCTGCCTGTCTAGGCAGAAGAGGAGGAGGAA
GAAGCCAAAAGAACCCCGGGCACCACCACAGCCAGGTTCAAGCACGAGTTAA

Translation (903 aa):
MLCCGHQGPATSLEALVGLWQKAQVTPPRPISSDVPFTLSRWGRATMKVKETNSKPKLASRGTFQRKGIK
IVGKWKQVTIDPNLFADGQMDDLVCFEELTDYRLVKNPSRLFSSEETKKRKAQAVSEEEEEEEGQSSSPK
KKIKLKKQRDAARAAEGAAAQNEYEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLD
TFQSTSPKLPKKSKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDI
LGAAETGSGKTLAFAIPMIHSVLQWHKMKAPPIPRSTGMPPREMRFGATAHLGSPCKDRTESGVLPEEAR
IETEAQPSDSGVQATPETSASASAQTLLVCDDDAGEGPSSLEEKPVPKQNEDGEEKFDAEQAGKLKQELC
DQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIAT
PGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPSRQTLVFSATLTLVH
QAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDLTRNEGTVETLTETKIHCETDEKDLYLYYFLM
QYPGRSLVFANSISCIKRLSGLLKVLDVMPLTLHACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIP
KVQHVIHYQVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYMDV
VKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKADQQEERRRQKQMKMLKQELRH
LLSQPLFQENLKTRYPTQSGRPPQPVLASRNIESALSCLSRQKRRRKKPKEPRAPPQPGSSTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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