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Report for CCDS49053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49053.1 Public Mus musculus 12 Etv1 23 108 98 CCDS HistoryNCBI Gene:14009Re-query CCDS DB by CCDS ID:49053.1Re-query CCDS DB by GeneID:14009See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095767.10 ENSMUSP00000093442.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095767.10Link to Ensembl Protein Viewer:ENSMUSP00000093442.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095767Re-query CCDS DB by Protein ID:ENSMUSP00000093442
Original member Current member EBI ENSMUST00000162563.7 ENSMUSP00000125157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162563.7Link to Ensembl Protein Viewer:ENSMUSP00000125157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162563Re-query CCDS DB by Protein ID:ENSMUSP00000125157
Original member Current member NCBI NM_007960.5 NP_031986.1 Accepted alive Link to Nucleotide Sequence:NM_007960.5Link to Protein Sequence:NP_031986.1Re-query CCDS DB by Nucleotide ID:NM_007960Re-query CCDS DB by Protein ID:NP_031986Link to BLAST:NP_031986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031986.1 477 P41164 477 100% 0 0

Chromosomal Locations for CCDS 49053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 38780935 38780979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38781799 38781886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38783238 38783285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38793171 38793224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38827778 38827907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38831081 38831269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38835069 38835316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38852220 38852288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38854160 38854228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38856941 38857110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38861287 38861388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38865548 38865769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGATGGATTTTATGACCAGCAAGTGCCTTACGTGGTCACCAACAGTCAGCGTGGGAGAAACTGTACCG
AGAAACCAACAAATGTCAGGAAAAGAAAATTCATTAACAGAGATCTGGCTCATGATTCAGAAGAACTCTT
TCAAGATCTGAGTCAGTTACAAGAAACATGGCTTGCTGAAGCTCAGGTACCTGACAATGATGAGCAGTTT
GTTCCAGACTATCAGGCTGAAAGTTTGGCTTTTCATGGCCTCCCACTGAAAATCAAGAAAGAACCCCACA
GCCCATGTTCAGAACTCGGGTCTGCTTGCAGTCAAGAGCAGCCCTTTAAATTCAGCTATGGAGAAAAGTG
CCTGTACAATGTCAGTGCCTATGATCAGAAGCCACAAGTGGGAATGAGGCCCTCCAATCCCCCGACACCA
TCCAGCACTCCAGTGTCCCCACTACACCATGCATCTCCAAACACAGCTCATACTCCGAAACCTGACCGGG
CCTTCCCAGCTCACCTCCCTCCTTCTCAGTCCATACCAGACAGCACCTACCCCATGGACCACAGATTTCG
CCGCCAGCTTTCTGAACCCTGTAATTCTTTTCCTCCTTTGCCGACAATGCCAAGGGAAGGGCGTCCTATG
TACCAACGCCAGATGTCTGAGCCAAACATCCCCTTCCCACCACAAGGCTTTAAGCAGGAGTACCACGACC
CAGTCTATGAACATACCACCATGGTTGGCGGTGCAGCCAGCCAAAGCTTCCCCCCTCCTTTGATGATCAA
ACAGGAACCCAGAGATTTTGCATATGACTCAGAAGTGCCTAGCTGCCACTCCATTTATATGAGGCAAGAA
GGCTTCCTGGCTCATCCAAGCAGAACAGAAGGCTGCATGTTTGAGAAGGGTCCCAGGCAGTTCTATGATG
ACACCTGTGTGGTCCCGGAGAAGTTCGATGGGGACATTAAGCAAGAGCCTGGAATGTACCGGGAAGGACC
CACGTACCAGAGGCGAGGATCCCTCCAGCTCTGGCAGTTTTTGGTAGCTCTTCTGGATGACCCTTCAAAT
TCTCATTTCATTGCCTGGACTGGACGAGGCATGGAATTTAAACTGATTGAGCCCGAAGAGGTGGCCCGGC
GTTGGGGCATTCAGAAGAACAGGCCGGCGATGAACTATGACAAACTTAGTCGTTCTCTCCGCTATTATTA
TGAGAAGGGAATCATGCAAAAGGTGGCTGGAGAAAGATACGTGTACAAATTTGTGTGTGACCCGGAAGCC
CTTTTCTCTATGGCCTTTCCGGATAACCAGCGCCCACTGCTGAAGACGGACATGGAACGTCACATCAACG
AAGAGGACACAGTGCCTCTGTCTCACTTTGATGAGAGCATGACCTACATGCCCGAAGGGGGCTGCTGCAA
CCCTCACCCCTACAACGAAGGATACGTGTACTAA

Translation (477 aa):
MDGFYDQQVPYVVTNSQRGRNCTEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQF
VPDYQAESLAFHGLPLKIKKEPHSPCSELGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTP
SSTPVSPLHHASPNTAHTPKPDRAFPAHLPPSQSIPDSTYPMDHRFRRQLSEPCNSFPPLPTMPREGRPM
YQRQMSEPNIPFPPQGFKQEYHDPVYEHTTMVGGAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQE
GFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSN
SHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMTYMPEGGCCNPHPYNEGYVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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