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Report for CCDS49013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49013.1 Public Mus musculus 11 Hexd 23 108 98 CCDS HistoryNCBI Gene:238023Re-query CCDS DB by CCDS ID:49013.1Re-query CCDS DB by GeneID:238023See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106117.7 ENSMUSP00000101723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106117.7Link to Ensembl Protein Viewer:ENSMUSP00000101723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106117Re-query CCDS DB by Protein ID:ENSMUSP00000101723
Original member Current member NCBI NM_001001333.2 NP_001001333.2 Accepted alive Link to Nucleotide Sequence:NM_001001333.2Link to Protein Sequence:NP_001001333.2Re-query CCDS DB by Nucleotide ID:NM_001001333Re-query CCDS DB by Protein ID:NP_001001333Link to BLAST:NP_001001333.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001333.2 486 Q3U4H6-1 486 100% 0 0

Chromosomal Locations for CCDS 49013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121207692 121207775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121212042 121212151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121213983 121214070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121214760 121214924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121216893 121217076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121218088 121218159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121218543 121218738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121219841 121219923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121221083 121221161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121221236 121221337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121221501 121221590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121222213 121222420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCATCACCCACGCCATTTAAGATGAGATTAGTTCATTTGGACCTTAAAGGAGCGCCGCCAAAGGTTT
CATATCTCTCTGAGGTTTTTCCCTTGTTCCATGCACTTGGTGCAAATGGCCTCCTCATTGAGTACGAAGA
CATGTTTCCCTATGAGGGCCACCTGAGGCTGCTGAGGGCCAAGCATGCATACAGCCCGTCCGAGGTTACA
GAGATCCTGCGCCTGGCCAGACTCAGTGAGCTGGAAGTTATCCCCTTGGTGCAGACATTCGGACACATGG
AGTTTGTGCTAAAGCATGCAGCATTTGCACATCTCCGTGAAGTGGCTCTCTTCCCCAACACCCTGAACCC
TCACGAGGCTGAGTCCCTGGCCTTGGTACAAGCTATGATCGATCAAATTCTGGAGCTACACAGGGATGTC
CGGTGGCTCCACATTGGCTGTGACGAGGTCTACTACTTGGGTGAGGGGGAAACCTCAAAACAGTGGCTAC
AGCAGGAACAGAACAGCCATGCGAAATTGTGCCTGAGCCACATGCAGGCAGTAGCCAGCCATGTGCTGAC
CCAGCACCCTGGCGTAACACCCTTGGTGTGGGATGACATGCTACGGGACATCCCTCAGGAACAGCTAAAA
GCATCTGGGGTGCCTCAACTGGTGGAGCCTGTCCTCTGGGACTATGGAGCTGACCTGGATGTCCATGGCA
AAGTTTTCCTCATAGGAAAGTACCAGGAGTGTGGCTTCCAGAGGCTGTGGGCTGCCAGTGCCTTCAAGGG
GGCCACAGGAGCTAGTCAGGCTCTGCCCCCTGTTGAGCACCACATCAGAAACCATGAGCTGTGGCTGCAG
GTGGCAGGCAGTGGACCAAAGGATGCTCTACAAGGAATCATCCTGACGGGCTGGCAGAGGTACGACCACT
TCTCTGTGCTGTGTGAGCTGCTTCCGGTGGGGATCCCATCCCTGGCTGCCTGCCTACAGTCACTTGTACA
TGGAGGCTTTGCTGAGGATGTTAGGCTGAGAGCGGAACGCTTCCTTGGGGTTTCAAGCCTGGAGATAGCG
GATACTGTAAGTGAGGGAGCTGGCTCCTTCCCTGGCAGTGACATCCATGCCCTCGTCACACAAATTAGTC
TCCACCTGCGCAGCTCTGTGGACACACTTCTGGAAAGGAACAGGTATGTCACTGGCTGGTTCAGCCCCTA
CCATCGTAGACGGAAGCTTGTTCACCCAGTTATGATCCAGCACATACAGCCGGAGGCACTCAGCCTTCTA
AGTAGGTGGAACAACCTCGTGCAGCAGTTGGAGGTGGCCCTGCAGCCGGTCTTCTACCCGGACACCATAG
AGGAGTGGCTGGAGGAGAATGTGCTCCCGAGTCTGCAGCGACTGCAGGATCTGCTGCAGGACCTGGGTGA
GGCGGCTGCCCGACAGCCACCACCCACCAGCCCAGGCTGGGACACAGGGCAGAACCCCTGA

Translation (486 aa):
MSSPTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRAKHAYSPSEVT
EILRLARLSELEVIPLVQTFGHMEFVLKHAAFAHLREVALFPNTLNPHEAESLALVQAMIDQILELHRDV
RWLHIGCDEVYYLGEGETSKQWLQQEQNSHAKLCLSHMQAVASHVLTQHPGVTPLVWDDMLRDIPQEQLK
ASGVPQLVEPVLWDYGADLDVHGKVFLIGKYQECGFQRLWAASAFKGATGASQALPPVEHHIRNHELWLQ
VAGSGPKDALQGIILTGWQRYDHFSVLCELLPVGIPSLAACLQSLVHGGFAEDVRLRAERFLGVSSLEIA
DTVSEGAGSFPGSDIHALVTQISLHLRSSVDTLLERNRYVTGWFSPYHRRRKLVHPVMIQHIQPEALSLL
SRWNNLVQQLEVALQPVFYPDTIEEWLEENVLPSLQRLQDLLQDLGEAAARQPPPTSPGWDTGQNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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