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Report for CCDS48971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48971.1 Public Mus musculus 11 Arsg 23 108 98 CCDS HistoryNCBI Gene:74008Re-query CCDS DB by CCDS ID:48971.1Re-query CCDS DB by GeneID:74008See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106696.1 ENSMUSP00000102307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106696.1Link to Ensembl Protein Viewer:ENSMUSP00000102307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106696Re-query CCDS DB by Protein ID:ENSMUSP00000102307
Original member Current member NCBI NM_001166177.1 NP_001159649.1 Accepted alive Link to Nucleotide Sequence:NM_001166177.1Link to Protein Sequence:NP_001159649.1Re-query CCDS DB by Nucleotide ID:NM_001166177Re-query CCDS DB by Protein ID:NP_001159649Link to BLAST:NP_001159649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159649.1 202 Q3TYD4-2 202 100% 0 0

Chromosomal Locations for CCDS 48971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109543816 109543828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109548014 109548122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109557951 109558071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109563182 109563272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109572219 109572493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGATTAAAATAGGGGGAAGTCCAACCAAGCAGACCACCTGGGAAGGTGGGCATCGGGTTCCAGCACTGG
CTTACTGGCCTGGCAGAGTTCCAGCCAACGTCACTAGCACCGCCTTGTTAAGCTTGCTAGACATCTTCCC
CACCGTGATAGCTCTGGCAGGAGCCAGCTTGCCCCCAAACCGGAAATTTGATGGACGGGATGTCTCTGAG
GTGCTCTTTGGCAAGTCACAGATGGGGCACAGGGTGCTATTCCACCCCAACAGTGGGGCTGCTGGAGAGT
ATGGCGCCCTGCAGACTGTCCGCCTAAACCATTACAAAGCTTTCTACATCACTGGTGGAGCCAAAGCTTG
TGATGGGAGCGTGGGTCCTGAGCAGCACCACGTGGCCCCTCTCATTTTCAACCTAGAAGATGCTGCTGAT
GAAGGGATGCCTCTACAGAAGGGGAGCCCCGAGTACCAGGAGGTGCTGCAGCAGGTCACCAGGGCTCTCG
CAGATGTCCTCCAAGACATCGCTGATGACAACAGCTCCCGAGCAGACTACACTCAGGATCCTTCAGTGAT
TCCTTGCTGTAACCCCTATCAAACTACCTGCCGTTGCCAACCGGTCTGA

Translation (202 aa):
MIKIGGSPTKQTTWEGGHRVPALAYWPGRVPANVTSTALLSLLDIFPTVIALAGASLPPNRKFDGRDVSE
VLFGKSQMGHRVLFHPNSGAAGEYGALQTVRLNHYKAFYITGGAKACDGSVGPEQHHVAPLIFNLEDAAD
EGMPLQKGSPEYQEVLQQVTRALADVLQDIADDNSSRADYTQDPSVIPCCNPYQTTCRCQPV


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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