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Report for CCDS48957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48957.1 Public Mus musculus 11 Smarcd2 23 108 98 CCDS HistoryNCBI Gene:83796Re-query CCDS DB by CCDS ID:48957.1Re-query CCDS DB by GeneID:83796See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106843.7 ENSMUSP00000102456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106843.7Link to Ensembl Protein Viewer:ENSMUSP00000102456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106843Re-query CCDS DB by Protein ID:ENSMUSP00000102456
Original member Current member NCBI NM_031878.2 NP_114084.2 Accepted alive Link to Nucleotide Sequence:NM_031878.2Link to Protein Sequence:NP_114084.2Re-query CCDS DB by Nucleotide ID:NM_031878Re-query CCDS DB by Protein ID:NP_114084Link to BLAST:NP_114084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114084.2 484 Q99JR8-2 484 100% 0 0

Chromosomal Locations for CCDS 48957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106264066 106264119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106264195 106264296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106264433 106264555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106264672 106264807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106264940 106265037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106265183 106265344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106265660 106265761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106265888 106265983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106266537 106266692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106266891 106267013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106267138 106267180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106267334 106267593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGAGGGTATGGGCTATGGACCTCGGAGGGCTCCGCCACTGACCTGTGTCCCTCCACTGTTCCACTTTC
CTCAGCGTCCTGGCATGTCACCAGGAAGCAGGATGCCCATGGCTGGCTTGCAGGTGGGACCTCCTGCCGG
TTCCCCATTTGGCACAGCTGCTCCGCTCCGACCTGGCATGCCACCTACCATGATGGATCCATTCCGAAAA
CGCCTGCTTGTGCCTCAGGCCCAGCCCCCGATGCCTGCCCAGCGCCGAGGGTTAAAGAGGAGGAAGATGG
CAGATAAGGTTCTACCTCAGCGAATCCGGGAGCTTGTCCCAGAGTCTCAGGCATACATGGATCTTTTAGC
TTTCGAGAGGAAGCTGGACCAGACCATCGCTCGCAAGCGGATGGAGATTCAAGAGGCCATCAAGAAGCCT
CTGACGCAAAAGCGAAAACTTCGGATCTATATTTCCAATACATTCAGCCCCAGCAAGGCGGATGGAGATA
ATGCGGGAACTGCGGGGACCCCTGGGGGAACCCCGGCAGCAGACAAGGTGGCCTCCTGGGAGCTTCGAGT
AGAGGGGAAACTGCTGGATGATCCTAGCAAACAGAAGAGGAAGTTCTCATCATTCTTTAAGAGCCTTGTG
ATTGAGTTGGACAAGGAACTCTATGGGCCGGACAACCATCTGGTGGAGTGGCATCGGATGCCCACCACAC
AGGAAACAGATGGCTTTCAGGTGAAACGGCCAGGAGATCTCAATGTCAAGTGCACCCTTCTGCTCATGCT
GGATCATCAGCCTCCTCAGTATAAACTGGACCCCCGCCTGGCGAGGTTGCTGGGAGTGCACACACAGACC
AGGGCGGCAATCATGCAGGCACTGTGGCTTTACATCAAACACAACCAGCTGCAGGACGGCCATGAGCGCG
AGTACATCAACTGCAATCGTTACTTCCGCCAGATCTTCAGTTGTGGCCGACTCCGTTTCTCCGAGATTCC
CATGAAGCTGGCTGGATTGCTGCAGCATCCAGACCCCATTGTTATTAATCATGTCATTAGTGTGGATCCT
AATGACCAAAAGAAGACAGCCTGCTATGACATTGATGTAGAGGTTGATGACCCACTGAAGGCCCAGATGA
GCAACTTCCTGGCCTCTACCACCAACCAGCAGGAGATTGCTTCTCTTGACGTCAAGATCCATGAGACCAT
TGAGTCCATCAACCAGCTAAAGACCCAGAGGGATTTCATGCTCAGCTTTAGCACCGAGCCCCAGGACTTC
ATCCAGGAGTGGCTCCGTTCCCAACGCCGAGACCTCAAGATCATCACAGATGTGATTGGAAACCCTGAGG
AGGAGAGACGAGCTGCTTTCTACCACCAGCCCTGGGCTCAGGAAGCAGTGGGGAGGCACATCTTTGCCAA
GGTGCAGCAGCGAAGGCAGGAACTGGAACAGGTGCTGGGAATTCGCCTGACCTAA

Translation (484 aa):
MEGMGYGPRRAPPLTCVPPLFHFPQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRK
RLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKP
LTQKRKLRIYISNTFSPSKADGDNAGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRKFSSFFKSLV
IELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQT
RAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDP
NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDF
IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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