CCDS Report for Consensus CDS

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Report for CCDS48956.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
48956.1	Public	Mus musculus	11	Ddx42	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48956.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000021046.5	ENSMUSP00000021046.5	Accepted	alive
		NCBI	NM_028074.4	NP_082350.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_082350.3	929	Q810A7-1	929	100%	0	0

Chromosomal Locations for CCDS 48956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)

Genome Browser links:

Chromosome	Start	Stop
11	106224098	106224318
11	106224784	106224934
11	106228763	106228824
11	106230330	106230366
11	106231132	106231281
11	106232806	106232910
11	106234852	106234971
11	106235607	106235783
11	106236995	106237123
11	106238508	106238607
11	106239136	106239183
11	106240002	106240099
11	106241551	106241827
11	106242875	106243101
11	106245327	106245437
11	106246776	106246877
11	106247492	106248166

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGAACTGGAATAAAGGCGGCCCTGGAACCAAGCGGGGATTTGGTTTTGGAGGTTTTGCTATCAGTGCTG GGAAGAAGGAGGAAGCCAAACTGCCACAGCAGTCCCATAGTGCCTTTGGGGCAGCCAGCTCTTCTTCTGG ATTTGGAAAGTCTGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAACGGGCCAACTTTGAT GAAGAAAATGCGTATTTTGAAGATGAAGAAGAAGACTCCAGCAATGTAGATTTACCTTACATTCCTGCTG AAAACTCACCTACCCGCCAGCAGTTCCATTCCAAGCCCGCAGACTCTGACAGTGATGATGACCCCTTAGA GGCATTCATGGCTGAAGTGGAGGATCAGGCTGCTAGAGACATGAAGAGACTTGAAGAAAAGGACAAGGAA AGAAAAAACGTCAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACA TGGCAGAGAACCCAACTGCTGGGGTGGTTCAGGAGGAAGAAGAGGACAATTTGGAGTATGACAGTGATGG AAATCCAATTGCACCTTCCAAAAAAATTATCGATCCCCTTCCTCCCATTGATCATTCGGAGATTGACTAT CCACCATTTGAAAAAAATTTTTACAATGAACATGAGGAGATAACCAACCTCACTCCACAGCAGTTGATAG ACCTGCGACATAAGCTCAACCTTCGGGTCTCTGGTGCTGCACCTCCCAGACCAGGAAGTAGCTTTGCTCA TTTTGGGTTTGATGAACAACTTATGCACCAGATTAGGAAATCTGAGTACACACAGCCGACCCCAATACAG TGTCAGGGTGTACCTGTAGCACTAAGTGGGAGAGACATGATTGGTATTGCTAAAACAGGCAGTGGGAAAA CTGCAGCCTTTATTTGGCCCATGTTGATTCATATAATGGATCAGAAGGAATTGGAACCAGGTGATGGACC AATTGCAGTTATTGTGTGTCCTACTAGGGAGCTTTGTCAACAGATCCACGCAGAGTGTAAGCGGTTTGGG AAAGCGTATAATCTTCGATCAGTGGCCGTGTATGGAGGAGGGAGCATGTGGGAGCAGGCCAAGGCCCTTC AGGAAGGGGCAGAGATTGTTGTATGTACCCCAGGTCGACTGATTGATCATGTGAAGAAAAAAGCTACTAA TCTTCAAAGAGTCTCTTACCTTGTGTTTGATGAAGCCGATCGAATGTTTGACATGGGATTTGAGTATCAG GTTCGGTCCATAGCAAGTCATGTTCGTCCTGACAGACAAACTCTCTTATTCAGTGCAACTTTTCGAAAGA AGATTGAAAAGTTGGCCAGAGACATCTTGATTGACCCTATTCGAGTGGTGCAGGGAGACATTGGAGAGGC GAATGAAGATGTGACACAGATTGTGGAGATTCTCCATTCCGGACCCAGTAAATGGAACTGGCTGACTCGG CGTCTGGTGGAGTTTACTTCCTCGGGGAGTGTGCTCTTGTTTGTTACTAAGAAAGCCAATGCTGAAGAGC TAGCCAGTAACCTGAAGCAGGAGGGTCATAATCTTGGTCTGCTCCATGGGGACATGGATCAGAGCGAAAG AAACAAGGTTATTTCAGATTTTAAGAAAAAGGACATCCCCGTCCTGGTGGCCACTGATGTTGCAGCCCGT GGTCTGGATATTCCTTCCATTAAGACAGTCATTAACTATGATGTAGCACGGGACATTGATACGCACACTC ACAGGATTGGCCGGACAGGAAGAGCTGGTGAGAAGGGTGTAGCCTATACCTTATTGACTCCAAAGGACAG CAATTTTGCTGGTGACCTTGTACGGAACCTGGAAGGAGCCAACCAACATGTTTCTAAGGAGCTCTTAGAT CTTGCAATGCAGAATGCCTGGTTTCGGAAATCTCGCTTCAAAGGAGGGAAAGGCAAAAAGCTGAACATTG GTGGAGGAGGCTTGGGCTATAGAGAGCGGCCTGGGCTGGGCTCTGAGAATTCGGACCGAGGAAATAATAA CAATGTAATGAGCAATTATGAAGCCTACAAGCCCTCCACAGGAGCCATGGGAGATAGGCTCACAGCAATG AAAGCAGCTTTTCAGTCCCAGTACAAGAGTCACTTTGTTGCAGCCAGTTTAAGTAATCAGAAGGCCGGAA CCTCTTCTGCAGGGGCAAGTGGATGGACTAGTGCAGGAAGCTTAAATTCTGTTCCAACTAATTCAGCACA GCAGGGCCATAATAGTCCTGACAACCCCATGACCAGTTCTACCAAGAACATCCCAGGCTTCAACAACTCT GGGAATATCAGTAGTGCCCCAGTGACCTACCCTTCTATTGGAGCCCAAGGAGTCAACAACACAGCTTCAG GGAATAACAGCCGTGAAGGGATTGGGGGTGGCAATGGGAAGAGAGAGAGATATACTGAGAACCGGGGTGG TAGCCGTCATAGCCATGGAGATGGTGGCAATCGGCATGGAGATGGTGGGCGCCATGGAGATGGATACCGT TATCCAGAAAGTGGTAGCCGTCATACTGATGGCCACCGACATGGAGAGACCAGGCATGGAGGAAGTGCCG GCAGACACGGAGAGAGCCGGGGTGCAAATGATGGCAGGAATGGAGAAAGCAGGAAAGAAGGTTTTAATCG TGAAAACAAGATGGACCCCAAGGTGGATAGCAGCAGGATGGACAAAGTGGACAGCAAGACAGATAAGACA CCTGATGGCTTTGCTGTTCCAGAGCCACCCAAAAGAAAGAAAAGCCGATGGGATAGTTAG
Translation (929 aa):
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFYKIGSKRANFD EENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKE RKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDY PPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQ CQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFG KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTR RLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR GLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLD LAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAM KAAFQSQYKSHFVAASLSNQKAGTSSAGASGWTSAGSLNSVPTNSAQQGHNSPDNPMTSSTKNIPGFNNS GNISSAPVTYPSIGAQGVNNTASGNNSREGIGGGNGKRERYTENRGGSRHSHGDGGNRHGDGGRHGDGYR YPESGSRHTDGHRHGETRHGGSAGRHGESRGANDGRNGESRKEGFNRENKMDPKVDSSRMDKVDSKTDKT PDGFAVPEPPKRKKSRWDS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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