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Report for CCDS48898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48898.1 Public Mus musculus 11 Cacnb1 23 108 98 CCDS HistoryNCBI Gene:12295Re-query CCDS DB by CCDS ID:48898.1Re-query CCDS DB by GeneID:12295See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107561.8 ENSMUSP00000103186.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107561.8Link to Ensembl Protein Viewer:ENSMUSP00000103186.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107561Re-query CCDS DB by Protein ID:ENSMUSP00000103186
Original member Current member NCBI NM_001159320.2 NP_001152792.1 Accepted alive Link to Nucleotide Sequence:NM_001159320.2Link to Protein Sequence:NP_001152792.1Re-query CCDS DB by Nucleotide ID:NM_001159320Re-query CCDS DB by Protein ID:NP_001152792Link to BLAST:NP_001152792.1

Chromosomal Locations for CCDS 48898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98005021 98005314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98005688 98005783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009281 98009432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009569 98009678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98009858 98009916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98010296 98010376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98011343 98011497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98011866 98011942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012185 98012321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98012812 98012934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98016723 98016842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98018273 98018302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGAGGTGCCCAGCCGGACCCTGGTAGTGGGCTCAGCAGAGTCCTACACGAGCCGACCATCAGACTCTG
ATGTGTCTCTGGAGGAGGACCGGGAAGCCTTAAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCTCGA
GAAAGCCAAGACCAAACCAGTGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGGGAT
GAGGTGCCTGTACAGGGAGTGGCCATCACCTTTGAGCCCAAGGACTTCCTACACATCAAGGAGAAGTACA
ATAATGACTGGTGGATTGGGCGGCTGGTGAAGGAAGGCTGCGAGGTTGGCTTCATCCCCAGCCCGGTCAA
ACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAGGT
GACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGGTA
ATGAAATGACTAACTTTGCCTTTGAGCTAGACCCCCTAGAGTTAGAGGAGGAGGAGGCAGAGCTAGGGGA
GCACGGCGGCTCAGCCAAGACTAGCGTGAGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGCATCCCC
TTCTTTAAGAAGACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGG
GACCGTCGCTCAAGGGCTATGAGGTGACAGACATGATGCAGAAAGCGTTGTTTGACTTCCTCAAGCATCG
GTTTGATGGCAGGATTTCCATCACCCGGGTAACAGCTGACATTTCCCTGGCCAAACGCTCCGTCCTCAAC
AACCCCAGCAAACACATCATCATTGAGCGCTCCAACACGCGTTCCAGCCTGGCTGAGGTACAGAGTGAAA
TTGAGAGGATCTTCGAGCTGGCCCGGACCTTGCAGCTGGTCGCCTTGGACGCTGACACCATCAACCACCC
AGCCCAGCTCTCTAAAACGTCGCTGGCCCCCATCATTGTTTACATCAAGATCACATCTCCCAAGGTACTG
CAGAGGCTCATCAAATCCCGAGGGAAGTCTCAATCCAAACACCTCAATGTCCAAATAGCAGCCTCGGAGA
AGCTGGCACAGTGTCCCCCCGAAATGTTTGACATAATCCTGGACGAGAACCAATTGGAAGATGCCTGCGA
GCACCTGGCTGAGTACTTGGAAGCCTACTGGAAGGCCACACATCCGCCTAGCAGCACGCCACCCAATCCG
CTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAGGTAC
AGGTGCTCACCTCGCTCAGGAGAAATCTCAGCTTCTGGGGCGGGCTGGAGGCCTCACCGCGGGGAGGCGA
CGCGGTGGCCCAGCCTCAGGAGCACGCCATGTAG

Translation (477 aa):
MEVPSRTLVVGSAESYTSRPSDSDVSLEEDREALRKEAERQALAQLEKAKTKPVAFAVRTNVGYNPSPGD
EVPVQGVAITFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGFIPSPVKLDSLRLLQEQTLRQNRLSSSKSG
DNSSSSLGDVVTGTRRPTPPASGNEMTNFAFELDPLELEEEEAELGEHGGSAKTSVSSVTTPPPHGKRIP
FFKKTEHVPPYDVVPSMRPIILVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLN
NPSKHIIIERSNTRSSLAEVQSEIERIFELARTLQLVALDADTINHPAQLSKTSLAPIIVYIKITSPKVL
QRLIKSRGKSQSKHLNVQIAASEKLAQCPPEMFDIILDENQLEDACEHLAEYLEAYWKATHPPSSTPPNP
LLNRTMATAALAASPAPVSNLQVQVLTSLRRNLSFWGGLEASPRGGDAVAQPQEHAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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