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Report for CCDS48852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48852.1 Public Mus musculus 11 Mrm3 23 108 98 CCDS HistoryNCBI Gene:67390Re-query CCDS DB by CCDS ID:48852.1Re-query CCDS DB by GeneID:67390See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040577.4 ENSMUSP00000042882.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040577.4Link to Ensembl Protein Viewer:ENSMUSP00000042882.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040577Re-query CCDS DB by Protein ID:ENSMUSP00000042882
Original member Current member NCBI NM_183263.5 NP_899086.2 Accepted alive Link to Nucleotide Sequence:NM_183263.5Link to Protein Sequence:NP_899086.2Re-query CCDS DB by Nucleotide ID:NM_183263Re-query CCDS DB by Protein ID:NP_899086Link to BLAST:NP_899086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899086.2 418 Q5ND52 418 100% 0 0

Chromosomal Locations for CCDS 48852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76243773 76244086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76244279 76244523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76247347 76247514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76249895 76250424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCAGCGCCGGCGAAGGGCATGTGGTGCTCCCTGGGATCATTGCTGCGGGTGGTCCAGACTCGGGACC
TCAACGCTCGGCGCTGGGTCCGGGCGCTGCGGCGTAGCCCGGTGAGAGTGTTGTCTCCCTCGGGACAGGT
GGAGGAACGGAAGCGCGCTCCTGACCAGCAGCCTCGCAAGGCGGTCCCTAAGGCCAGTTCCCAGGGACAG
CGACAGAAACAGCCTCTTGAGACATCCCCATCCCAGACCCCTCACACCTGGGAAGAGGCAGGGCTTCGCT
ACGATAAGGCCTTTCCCGGGGACAGGAGGCTAAGCAGTGTGATGACAATAGTTAAGTCCAGGCCTTTTCG
GGAAAAGCAAGGGAAGATCCTACTGGAAGGTCGCAGGCTGATTGCAGATGCTCTCAAGGCTGGAGCTGTG
CCCAAAGCGTTCTTTTTTAGCCGTCTGGAGTACGTCAAGGAGTTGCCGGTAGACAAGCTGAAAGACGTCA
GCCTCATTAAGGTGAAATTTGAGGACATCAAGGATTGGTCAGACCTAGTAACGCCACAAGGAATAATGGG
GATTTTTGCCAAACCTGACCCTGTTAAGATGACATATCCAGAGACTCCGCTTCACCATACACTGCCCCTA
GTGTTGATTTGTGACAATCTCCGTGACCCTGGGAACCTGGGGACAATCCTGAGATCTGCAGCTGGAGCAG
GCTGCAGTAAAGTCTTACTCACCAAAGGCTGTGTGGATGCCTGGGAGCCTAAAGTGCTCCGGGCAGGCAT
GGGGGCACATTTCCAGGTACCCATTGTGAACAATGTGGAATGGGAAACAGTGCCCAATCACTTGCCTCCT
GACACTCGAGTCTATGTGGCAGACAACTGTGGTCACTATGCCCAGGTTCAGATGTCTGATAAAACCGGTG
ACCGTGACTGGGCATGTGATCGCCGATTCTTAAAGTTTCACAAGTATGAAGAGGACCTAGACACTAAAAC
CAGAAAGGACTGGCTGCCCAAACTTGAGGTCCAGAGTTATGATTTGGACTGGACAGGAGCACCAGCAGCT
GTGGTGATAGGTGGGGAGACGCATGGAGTGAGCCTGGAATCCCTGCAACTGGCCGAGAGTACCGGTGGCA
AGAGACTGCTGATCCCCGTTGTACCTGGTGTGGACAGTCTGAACTCAGCCATGGCTGCGAGCATCCTGCT
CTTTGAAGGGAAAAGGCAGCTGAGGATAAAGGTGGAAGACTTGAGCAGGGACAGGAGTTACCACTGA

Translation (418 aa):
MAAPAKGMWCSLGSLLRVVQTRDLNARRWVRALRRSPVRVLSPSGQVEERKRAPDQQPRKAVPKASSQGQ
RQKQPLETSPSQTPHTWEEAGLRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAV
PKAFFFSRLEYVKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPL
VLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPP
DTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAA
VVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVEDLSRDRSYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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