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Report for CCDS48825.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
48825.2 |
Public |
Mus musculus |
11 |
Chd3 |
23 |
108 |
98 |
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Public Note for CCDS 48825.1 |
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and homology data. |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 48825.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000108661.7 |
ENSMUSP00000104301.1 |
Accepted |
alive |
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NCBI |
NM_146019.4 |
NP_666131.3 |
Accepted |
alive |
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Chromosomal Locations for CCDS 48825.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6168 nt): ATGGCTTCCCCTCTGAGGGACGAGGAGGAGGAGGAGGAGGAGATGGTGGTGTCGGAGGAGGAAGAAGAGG AGGAAGAAGAGGGCGACGAGGAGGAGGAGGAGGTGGAGGCGGCCGACGAGGACGATGAGGAGGAGGACGA AGAGGGAGTACTCGGGCGCGGGCCGGGCCACGACCGGAGCCGCGACCGCCACAGCCCCCCCAGCTGCCAC CTCTTCCCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCGCCACCAGATAAAGATGATATTCGGCTGCTGC CTTCAGCGTTGGGTGTGAAGAAGCGAAAACGAGGCCCTAAGAAGCAGAAGGAAAACAAGCCAGGCAAACC TAGGAAACGGAAGAAGCTCGACAGTGAAGAGGAATTTGGCTCAGAGCGAGATGAGTACCGGGAGAAGTCA GAGAGTGGAGGCAGCGAGTATGGAACTGGACCAGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAAG AGAAAAAAACAAAAAGGAGGAAAAGGGGAGAAGGGGATGGGGGACACAAGCAGGTGGAGCAGAAGTCATC CGCAACCTTGCTTCTGACCTGGGGCTTAGAGGATGTGGAACACGTGTTCTCCGAGGAGGACTACCACACA CTTACCAATTACAAAGCTTTCAGTCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCCGA TGTCAAAGATGATGACCATCCTGGGGGCCAAGTGGAGAGAGTTCAGTGCCAATAACCCCTTCAAAGGGTC GGCAGCTGCCGTGGCGGCGGCAGCGGCAGCAGCAGCAGCAGCTGTGGCTGAGCAGGTGTCAGCTGCTGTC TCCTCAGCCACCCCCATAGCACCATCTGGACCCCCCCCTGCCCTTCCACCACCCCCTGCTCCTGAAATCC AGCCCCCACCCATCAGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCACAAGAGGCGGAATAAGAG CCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGAGGGAAGAAGATGGCGCCACTGAAAATCAAGCTAGGG CTGCTGGGTGGCAAGAGGAAGAAGGCGGGCTCGTGTGCTTTTCAGAGTGAGGAGGGCCATGAACCAGAGG CAGAGGAGTCAGACCTGGACAGTGGTAGTGTCCATAGTGCCTCAGGCTGGCCTGATGGCCCTGTCCGTGC CAAGAAGCTGAAGCGAGGTCGGCCAGGAAGGAAGAAGAAGAAGGTCCTGGGCTGTCCTGCAGTGACCGGA GAGGAGGAAGTTGACGGCTACGAGACGGATCACCAGGATTACTGTGAGGTGTGCCAGCAGGGCGGGGAAA TTATTCTGTGCGACACCTGCCCCCGTGCCTACCACCTCGTCTGCCTTGACCCCGAGCTTGACCGGGCTCC TGAGGGCAAGTGGAGCTGCCCCCACTGTGAGAAGGAGGGGGTGCAGTGGGAGGCCAAGGAGGAGGAGGAA GAGTATGAGGAGGAAGGGGAGGAGGGAGAGAAGGAGGAAGAGGATGACCACATGGAGTACTGCCGAGTGT GCAAGGACGGCGGGGAGCTCCTGTGCTGTGACGCTTGCATCTCCTCCTACCACATCCATTGTCTGAACCC CCCACTGCCTGACATTCCCAATGGCGAATGGCTGTGCCCACGATGCACATGTCCTGTGCTGAAGGGCCGT GTTCAGAAGATCTTGCATTGGCGATGGGGGGAGCCACCTGTGGCAGTGCCAGCACCGCAGCAGGCAGACG GGAACCCAGACGTCCCACCCCCTCGTCCTCTTCAAGGCAGATCAGAGCGAGAGTTCTTTGTCAAGTGGGT GGGACTGTCCTACTGGCACTGTTCCTGGGCCAAGGAGCTTCAGCTGGAAATCTTCCACTTGGTAATGTAC CGAAACTATCAACGGAAAAATGACATGGACGAGCCCCCGCCGCTGGACTATGGCTCTGGTGAGGATGATG GGAAGAGTGACAAGCGCAAGGTGAAGGACCCGCACTATGCGGAGATGGAGGAGAAGTACTACCGTTTCGG CATCAAGCCGGAGTGGATGACTGTCCACCGCATCATTAACCATAGTATGGATAAAAAGGGGAACTACCAC TACCTTGTGAAATGGAAGGATCTGCCTTACGACCAGTCCACGTGGGAGGAGGATGAGATGAACATCCCAG AGTACGACGACCATAAGCAGAGCTACTGGAGACACCGTGAGCTAATTATGGGCGAGGACCCCGCACAGCC TCGAAAGTATAAGAAGAAGAAGAAGGAGTTACAGGGTGATGGGCCTCCCAGTTCACCTACTAACGATCCA ACAGTGAAATATGAGACTCAGCCAAGGTTCATCACAGCCACGGGCGGCACACTGCACATGTATCAGCTGG AAGGGCTGAACTGGCTGCGCTTCTCGTGGGCCCAAGGCACTGACACGATCCTGGCGGATGAGATGGGGCT GGGCAAGACCATCCAAACCATCGTCTTTCTCTACTCACTGTATAAGGAGGGCCACACAAAAGGTCCCTTC CTGGTGAGTGCTCCACTCTCCACCATCATCAACTGGGAACGGGAGTTCCAGATGTGGGCACCCAAGTTCT ATGTGGTCACATATACGGGCGACAAGGACAGCCGGGCCATCATAAGAGAAAACGAGTTTTCGTTTGAGGA TAATGCCATAAAAGGCGGGAAGAAAGCTTTCAAGATGAAGAGAGAGGCACAGGTGAAGTTCCATGTCCTT CTGACATCATACGAGCTGATCACCATCGATCAGGCGGCGCTTGGCTCCATCCGCTGGGCCTGTCTTGTGG TGGATGAGGCTCATCGACTCAAGAACAACCAGTCCAAGTTTTTCAGGGTCCTCAATGGCTACAAGATAGA TCATAAGTTGTTGCTGACGGGGACCCCGCTGCAGAACAACCTGGAGGAGCTCTTCCACCTTCTCAACTTC CTCACCCCAGAGAGGTTCAACAACTTGGAGGGCTTCTTGGAGGAGTTTGCCGACATATCCAAAGAGGACC AGATTAAGAAACTGCATGATTTACTGGGGCCACATATGCTTCGGAGACTCAAGGCGGATGTCTTTAAGAA CATGCCAGCCAAGACCGAGCTCATTGTTCGAGTGGAGCTAAGCCCCATGCAGAAGAAATACTACAAGTAC ATCCTAACTCGAAATTTTGAGGCCTTGAATTCTCGAGGTGGTGGGAACCAAGTGTCCCTGCTTAACATCA TGATGGACCTTAAGAAGTGCTGCAACCACCCGTACCTCTTCCCCGTGGCTGCTATGGAGTCTCCTAAACT CCCCAGTGGGGCTTATGAGGGTGGGGCGCTTATTAAGTCATCAGGGAAGCTGCTGCTGCTGCAGAAGATG CTGCGCAAGCTGAAGGAGCAAGGACACAGAGTGCTCATCTTCTCCCAGATGACCAAAATGTTAGACCTTC TGGAGGACTTCCTAGACTATGAAGGCTATAAGTATGAGCGCATCGATGGTGGTATCACGGGCGCCCTCAG GCAGGAGGCCATTGATCGCTTCAATGCCCCTGGTGCCCAACAGTTCTGCTTCCTCCTGTCCACCCGAGCT GGTGGCCTGGGCATCAACTTGGCCACTGCTGACACTGTCATCATCTTCGATTCTGACTGGAACCCCCATA ATGACATCCAGGCCTTCAGCAGAGCCCATCGGATTGGCCAGGCCAACAAAGTGATGATTTACCGGTTTGT GACCCGAGCCTCTGTGGAAGAACGAATCACACAGGTGGCTAAGAGAAAGATGATGCTGACACACCTAGTG GTGCGGCCAGGCCTGGGCTCCAAGGCTGGCTCCATGTCCAAGCAGGAGCTGGACGACATCCTCAAATTTG GCACCGAGGAGCTATTCAAAGATGAAAATGAGGGAGAGAATAAGGAGGAGGATAGCAGTGTGATCCACTA TGACAATGAAGCCATCGCTCGACTGCTGGACCGTAACCAGGATGCGACTGAGGACACGGATGTGCAGAAC ATGAACGAATACCTCAGCTCCTTCAAGGTGGCACAGTATGTCGTGCGTGAAGAAGACAAGATTGAGGAGA TCGAGCGAGAGATCATCAAGCAGGAGGAGAATGTGGATCCTGACTACTGGGAGAAGCTACTGAGACATCA CTATGAGCAGCAGCAAGAAGACCTGGCCCGCAACCTAGGCAAGGGCAAGCGGGTTAGAAAGCAGGTTAAC TACAACGATGCCGCCCAGGAGGATCAAGACAACCAGTCAGAGTACTCAGTGGGGTCCGAGGAAGAGGATG AAGACTTTGATGAGCGTCCTGAAGGCCGTCGACAGTCAAAGAGGCAGCTTCGAAATGAGAAGGACAAGCC ACTGCCTCCATTGCTGGCTCGGGTTGGGGGCAACATTGAAGTACTGGGATTCAATACTCGACAACGGAAG GCCTTCCTTAACGCTGTGATGCGCTGGGGGATGCCACCCCAGGACGCGTTCACCACACAGTGGCTAGTGA GAGACCTGAGGGGCAAAACGGAGAAGGAGTTTAAGGCCTATGTGTCTTTGTTCATGCGCCATCTGTGTGA GCCTGGGGCAGATGGCTCCGAAACGTTTGCGGATGGGGTCCCTCGGGAGGGGCTGAGTCGCCAGCAGGTG TTGACCCGCATTGGAGTCATGTCTCTCGTCAAGAAGAAGGTCCAAGAGTTTGAGCATATCAATGGACGCT GGTCAATGCCAGAGCTGATGCCTGACCCCAGTGCTGAGTCCAAGCGCTCTTCCAGAGCCTCCTCTCCAAC CAAAACATCTCCCACCACTCCTGAGGCTTCTACAACCAACAGTCCTTGTACCTCTAAGCCTGCTACTCCA GCTCCAAGTGAGAAGGGAGATGGTGTGAGGACACCGCTGGACAAGGATGACACTGAGAACCAGGAAGAGA AGCCAGAGAAGAACAGCAAAGTGGGGGAAAAGATGGAGGCAGAGGTCGATTCTCCCAGCCCAGCCCCATC ACTGGGAGAACGGCTAGAACACAGGAAAATTCTCTTAGAGGATGAAGCACCAGGGGTACCTGGAGAGACA GAGCCTGAACCTGGATACAGAGGAGACAGGGAGAAGTCTGCCTCAGAGCCAACACCAGGAGAAAGGGGGG AGGAGAAGCCATTGGATGTACAGGAACACAGGGAGAGGACGGAGGGGGAAACAGGGGATTTGGGCAAGAG AGAAGATGTAAAAGCCGATCGGGAGCTTCGACTTGGGCCTCCTCGAGATGAGCCACGGCCCAATGGGCGC CGTGAGGAGAAGGTGGAGAAGCCGAGATTCATGTTCAACATTGCCGATGGTGGTTTCACAGAGCTGCACA CATTGTGGCAGAATGAGGAACGAGCAGCTATTTCCTCGGGGAAACTCAATGAGATCTGGCACCGGAGGCA TGACTACTGGCTTCTGGCTGGCATTGTCCTCCATGGCTATGCCCGGTGGCAAGACATCCAGAATGACGCT CAGTTTGCCATTATCAATGAACCATTTAAAACGGAAGCCAATAAGGGGAACTTCCTGGAGATGAAAAATA AATTCCTGGCCCGGAGGTTCAAGCTCCTGGAGCAGGCGCTGGTGATCGAGGAGCAGCTGCGGCGGGCGGC CTACCTGAACCTGTCACAGGAGCCGGCGCACCCCGCCATGGCCCTCCACGCCCGCTTTGCCGAGGCCGAG TGCCTAGCCGAGAGCCACCAGCACCTCTCCAAGGAGTCGCTGGCAGGGAACAAGCCAGCCAACGCTGTCC TGCACAAGGTTCTGAACCAGCTGGAGGAATTGCTGAGCGACATGAAGGCAGATGTGACCCGCCTGCCAGC CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGATGTCCGAGCGCAGCATCCTCAGCCGGCTG GCCAGCAAGGGCACGGAGCCTCACCCCACACCGGCCTTTCCCCCGGGTCCTTACGCCACACCTCCGGGGT ACGGGGCAGCCTTCAGCGCCGCACCCGTAGGGGCCCTGGCCGCCGCAGGCGCCAATTACAGCCAGATGCC TGCAGGGTCCTTCATCACAGCCACCACCAACGGCCCTCCAGTGCTGGTGAAGAAAGAGAAGGAAATGGTG GGGGCGTTGGTATCAGACGGGCTGGGGCTGGATCGGAAGGAGCCCCGAGCAGGGGAGGTGATTTGTATAG ACGACTGA
Translation (2055 aa): MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEEDEEGVLGRGPGHDRSRDRHSPPSCH LFPPPPPPLPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKS ESGGSEYGTGPGRKRRRKHREKKEKKTKRRKRGEGDGGHKQVEQKSSATLLLTWGLEDVEHVFSEEDYHT LTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAV SSATPIAPSGPPPALPPPPAPEIQPPPIRRAKTKEGKGPGHKRRNKSPRVPDGRKKLRGKKMAPLKIKLG LLGGKRKKAGSCAFQSEEGHEPEAEESDLDSGSVHSASGWPDGPVRAKKLKRGRPGRKKKKVLGCPAVTG EEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEE EYEEEGEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGR VQKILHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMY RNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSMDKKGNYH YLVKWKDLPYDQSTWEEDEMNIPEYDDHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDP TVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPF LVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVL LTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF LTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKM LRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRA GGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV VRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVN YNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRK AFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQV LTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSAESKRSSRASSPTKTSPTTPEASTTNSPCTSKPATP APSEKGDGVRTPLDKDDTENQEEKPEKNSKVGEKMEAEVDSPSPAPSLGERLEHRKILLEDEAPGVPGET EPEPGYRGDREKSASEPTPGERGEEKPLDVQEHRERTEGETGDLGKREDVKADRELRLGPPRDEPRPNGR REEKVEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDA QFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAE CLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRL ASKGTEPHPTPAFPPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITATTNGPPVLVKKEKEMV GALVSDGLGLDRKEPRAGEVICIDD
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