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Report for CCDS48806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48806.1 Public Mus musculus 11 Or2t46 23 108 98 CCDS HistoryNCBI Gene:258261Re-query CCDS DB by CCDS ID:48806.1Re-query CCDS DB by GeneID:258261See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169428.4 ENSMUSP00000131257.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169428.4Link to Ensembl Protein Viewer:ENSMUSP00000131257.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169428Re-query CCDS DB by Protein ID:ENSMUSP00000131257
Original member Current member EBI ENSMUST00000203418.3 ENSMUSP00000145386.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203418.3Link to Ensembl Protein Viewer:ENSMUSP00000145386.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000203418Re-query CCDS DB by Protein ID:ENSMUSP00000145386
Original member Current member NCBI NM_207153.2 NP_997036.2 Accepted alive Link to Nucleotide Sequence:NM_207153.2Link to Protein Sequence:NP_997036.2Re-query CCDS DB by Nucleotide ID:NM_207153Re-query CCDS DB by Protein ID:NP_997036Link to BLAST:NP_997036.2

Chromosomal Locations for CCDS 48806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58580846 58581826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGACCTCACCACCTGGATGAACAACTACACTACACAGTCAGATTTCACCCTGGTGGGATTCTTCAGTC
AATCCAAACACCCTGTCCTGCTTGCTGTGGTCATATTTGTGGTTTTCCTGATGGCCTTGTCTGGGAACGC
CCTCCTGATCCTGCTGGTACTCTCTGACACCCACCTTCACACACCAATGTACTTTTTTATCAGCCAGCTG
TCCCTCATGGACATGATGTACATTTCTGTCACTGTGCCCAAGATGCTCATGGACCAGGTCCTGGGGAGCC
ACAAGATCTCAGCTGCTGCCTGTGGGATGCAGATGTTCCTCTACCTGACATTAGCAGGGTCAGAATATTT
GCTTCTAGCTGCCATGTCTTATGACCGCTATGTAGCCATCTGTCATCCACTCCGGTATCCTGTCCTCATG
AACCACAGGGTGTGCCTCCTGCTGATGTCTTTATGTTGGATCCTGGGATCCTTGGATGGCTTCATGCTCA
CCCCTATCACCATGACTTTCCCATTCTGTGGATCCCGGGAGATCCATCACTTCTTCTGTGAGGTTCCTGC
TGTGACAAAGCTCTCCTGCTCAGACACCTGGCTCTATGAGACCCTCATGTATGTGTGCTGTGTGCTCATG
CTTCTCATCCCTGTGACAGTCATTTCAGGCTCCTATACATCCATCCTCCTCACTGTTCTCAGGATGAACT
CAGCAGAGGGCAGGAAGAAGGCCCTTGCCACCTGCTCCTCCCACATGACTGTGGTCACCCTCTTCTATGG
CGCTGCTGTCTATACCTACATTTTCCCTGCCTCCCTCCACAGCCCTGAGAAGGACATGGTGGTGTCTGTG
TTTTACACCATACTCACCCCTCTGTTGAACCCACTGATCTATAGTTTTAGGAATAAGAATGTCACAGAGG
CTATGAAGAAACTGTTGGGTGTGAAACCCTTCTTTCAAGAATCTTTAAAGGAAGTCATTTATAAAGAATA
G

Translation (326 aa):
MDLTTWMNNYTTQSDFTLVGFFSQSKHPVLLAVVIFVVFLMALSGNALLILLVLSDTHLHTPMYFFISQL
SLMDMMYISVTVPKMLMDQVLGSHKISAAACGMQMFLYLTLAGSEYLLLAAMSYDRYVAICHPLRYPVLM
NHRVCLLLMSLCWILGSLDGFMLTPITMTFPFCGSREIHHFFCEVPAVTKLSCSDTWLYETLMYVCCVLM
LLIPVTVISGSYTSILLTVLRMNSAEGRKKALATCSSHMTVVTLFYGAAVYTYIFPASLHSPEKDMVVSV
FYTILTPLLNPLIYSFRNKNVTEAMKKLLGVKPFFQESLKEVIYKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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