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Report for CCDS48778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48778.1 Public Mus musculus 11 Havcr1 23 108 98 CCDS HistoryNCBI Gene:171283Re-query CCDS DB by CCDS ID:48778.1Re-query CCDS DB by GeneID:171283See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081819.10 ENSMUSP00000080503.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081819.10Link to Ensembl Protein Viewer:ENSMUSP00000080503.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081819Re-query CCDS DB by Protein ID:ENSMUSP00000080503
Original member Current member EBI ENSMUST00000109223.7 ENSMUSP00000104846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109223.7Link to Ensembl Protein Viewer:ENSMUSP00000104846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109223Re-query CCDS DB by Protein ID:ENSMUSP00000104846
Original member Current member NCBI NM_001166631.1 NP_001160103.1 Accepted alive Link to Nucleotide Sequence:NM_001166631.1Link to Protein Sequence:NP_001160103.1Re-query CCDS DB by Nucleotide ID:NM_001166631Re-query CCDS DB by Protein ID:NP_001160103Link to BLAST:NP_001160103.1
Original member Current member NCBI NM_001166632.1 NP_001160104.1 Accepted alive Link to Nucleotide Sequence:NM_001166632.1Link to Protein Sequence:NP_001160104.1Re-query CCDS DB by Nucleotide ID:NM_001166632Re-query CCDS DB by Protein ID:NP_001160104Link to BLAST:NP_001160104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160103.1 282 Q5QNS5-2 282 99.2908% 0 2
NP_001160104.1 282 Q5QNS5-2 282 99.2908% 0 2

Chromosomal Locations for CCDS 48778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46751177 46751225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46752304 46752642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46756129 46756287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46770491 46770540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46773634 46773745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46775490 46775526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46778511 46778613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAATCAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTTCTCCCAGGCGCTGTGGATTCTTATGTGG
AAGTAAAGGGGGTGGTGGGTCACCCTGTCACACTTCCATGTACTTACTCAACATATCGTGGAATCACAAC
GACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCTTGTCAAAATACACTTATTTGGACCAATGGACAT
CGTGTCACCTATCAGAAGAGCAGTCGGTACAACTTAAAGGGGCATATTTCAGAAGGAGATGTGTCCTTGA
CGATAGAGAACTCTGTTGAGAGTGACAGTGGTCTGTATTGTTGTCGAGTGGAGATTCCTGGATGGTTTAA
TGATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGATTCCCACACGTCCTCCAAGAAGACCCACA
ACTACAAGGCCCACAGCTACAGGAAGACCCACGACTATTTCAACAAGATCCACACATGTACCAACATCAA
CCAGAGTCTCTACCTCCACTCCTCCAACATCTACACACACATGGACTCACAAACCAGACTGGAATGGCAC
TGTGACATCCTCAGGAGATACCTGGAGTAATCACACTGAAGCAATCCCTCCAGGGAAGCCGCAGAAAAAC
CCTACTAAGGGCTTCTATGTTGGCATCTGCATCGCAGCCCTGCTGCTACTGCTCCTTGTGAGCACCGTGG
CTATCACCAGGTACATACTTATGAAAAGGAAGTCAGCATCTCTAAGCGTGGTTGCCTTCCGTGTCTCTAA
GATTGAAGCTTTGCAGAACGCAGCGGTTGTGCATTCCCGAGCTGAAGACAACATCTACATTGTTGAAGAT
AGACCTTGA

Translation (282 aa):
MNQIQVFISGLILLLPGAVDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGH
RVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEIPTRPPRRPT
TTRPTATGRPTTISTRSTHVPTSTRVSTSTPPTSTHTWTHKPDWNGTVTSSGDTWSNHTEAIPPGKPQKN
PTKGFYVGICIAALLLLLLVSTVAITRYILMKRKSASLSVVAFRVSKIEALQNAAVVHSRAEDNIYIVED
RP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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