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Report for CCDS48671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48671.1 Public Mus musculus 10 Amdhd1 23 108 98 CCDS HistoryNCBI Gene:71761Re-query CCDS DB by CCDS ID:48671.1Re-query CCDS DB by GeneID:71761See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016034.2 ENSMUSP00000016034.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016034.2Link to Ensembl Protein Viewer:ENSMUSP00000016034.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000016034Re-query CCDS DB by Protein ID:ENSMUSP00000016034
Original member Current member NCBI NM_027908.1 NP_082184.1 Accepted alive Link to Nucleotide Sequence:NM_027908.1Link to Protein Sequence:NP_082184.1Re-query CCDS DB by Nucleotide ID:NM_027908Re-query CCDS DB by Protein ID:NP_082184Link to BLAST:NP_082184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082184.1 426 Q9DBA8 426 100% 0 0

Chromosomal Locations for CCDS 48671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93524415 93524502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93525846 93526006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93527193 93527286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93527597 93527721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93531478 93531703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93534388 93534665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93536625 93536689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93537259 93537365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93539834 93539970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGACGAGCAGCCACCGCCTCCTGCTGGAGAACGCACAGCAAGTGGTGCTGGTGTGTGCCCGCGGCGAGC
GCTTCCTGACCGGGTCTGCGCTGCGCAGCCTGGCGGTGCTGGAGGGCGCCAGCGTGGTGGTGGGCACTGA
CGGGCTTATAAAAGCTGTTGGCCCTGCTGCTGTTATCCAAAAACAGTTTTCCGGAGAAACTTTTGAAGAA
AGAATTGATTGCTCTGGGAAATGCGTCTTGCCAGGTTTGGTGGACGCACACACACATCCGGTGTGGGCGG
GTGAAAGAGTCCACGAGTTTGCAATGAAGTTGGCAGGGGCCACGTACATGGACATTCACCAGGCTGGAGG
AGGGATCAACTTCACGGTGGAGCACACCCGCCAGGCCTCGGAGGAGGAACTGTTCTGCTCCTTCCAGCAG
CGGCTGCAGTGCATGATGAGGGCTGGCACCACGCTGGTGGAGTGCAAGAGCGGATATGGCCTCAACCTGG
AGACAGAGCTCAAGATGCTGCGCGTAATCGAGCGCGCCAGGCGGGAGCTGCACCTCAGCCTCTCAGCCAC
TTACTGCGGAGCTCACTCAGTACCCAAAGGGAAAACTGCAGTGGAAGCTGCTGATGACATCATCAGTCAC
CACCTGCCAAGGCTGAAGGAACTCAGCAGAAATGGGGACCTGCATGTTGACAACATAGATGTGTTCTGTG
AGAAGGGTGTCTTTGATCTGGATACCACCAGAAGGATTCTGGAAGGTGGAAAAAAGATGGGCTTACAGAT
CAACTTCCATGGGGATGAACTCCACCCGATGAAGGCTGCCGAGCTTGGGGCCGAACTGGGAGCACAGGCT
ATCAGCCACCTGGAGGAAGTCAGCGACGAAGGCATTGCTGCCATGGCTGCGGCTCGGTGTTCTGCTGTCC
TCCTGCCCACCACAGCCTACATGCTGAGGCTGAAGCAGCCTCGAGCCAGGAAGATGTTAGACGAGGGTGT
CATAGTTGCTCTGGGCAGCGATTTCAACCCCAACGCGTACTGCTTTTCCATGCCGATGGTCATGCACCTG
GCCTGTGTGAACATGAGAATGTCCATGCCGGAGGCCTTGGCCGCTGCCACCATCAACGCGGCTTATGCGC
TGGGAAAATCTCACACCCACGGATCTTTGGAAGTTGGCAAGCAGGGGGACGCCATCATCATCAATGCATC
CAGATGGGAACATTTGATTTACCAGTTTGGAGGCCATCATGAATTAATTGATTATGTTATAACTAAAGGA
AAAGTCATCTACAAGAAGTGA

Translation (426 aa):
MTSSHRLLLENAQQVVLVCARGERFLTGSALRSLAVLEGASVVVGTDGLIKAVGPAAVIQKQFSGETFEE
RIDCSGKCVLPGLVDAHTHPVWAGERVHEFAMKLAGATYMDIHQAGGGINFTVEHTRQASEEELFCSFQQ
RLQCMMRAGTTLVECKSGYGLNLETELKMLRVIERARRELHLSLSATYCGAHSVPKGKTAVEAADDIISH
HLPRLKELSRNGDLHVDNIDVFCEKGVFDLDTTRRILEGGKKMGLQINFHGDELHPMKAAELGAELGAQA
ISHLEEVSDEGIAAMAAARCSAVLLPTTAYMLRLKQPRARKMLDEGVIVALGSDFNPNAYCFSMPMVMHL
ACVNMRMSMPEALAAATINAAYALGKSHTHGSLEVGKQGDAIIINASRWEHLIYQFGGHHELIDYVITKG
KVIYKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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