NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48665.1 Public Mus musculus 10 Chpt1 23 108 98 CCDS HistoryNCBI Gene:212862Re-query CCDS DB by CCDS ID:48665.1Re-query CCDS DB by GeneID:212862See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117440.7 ENSMUSP00000112708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117440.7Link to Ensembl Protein Viewer:ENSMUSP00000112708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117440Re-query CCDS DB by Protein ID:ENSMUSP00000112708
Original member Current member NCBI NM_001146690.1 NP_001140162.1 Accepted alive Link to Nucleotide Sequence:NM_001146690.1Link to Protein Sequence:NP_001140162.1Re-query CCDS DB by Nucleotide ID:NM_001146690Re-query CCDS DB by Protein ID:NP_001140162Link to BLAST:NP_001140162.1

Chromosomal Locations for CCDS 48665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88472940 88472984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88475426 88475536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88476348 88476473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88477010 88477168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88480815 88480946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88482231 88482315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88488382 88488523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88489581 88489728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88503585 88503857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGCGGGCGCCGGGGCCAGGCCGGCGCCGCGCTGGGTAAAGGCGCTAGGTGAGCCGCTCAGTGCCG
CGCAGCTGCGGCGGCTGGAGGAGCACCGCTACACCGCGGTGGGAGAGTCGCTGTTCGAGCCGCCGCTGCA
GCTTTACTGGACCTGGCTGCTCCAATGGATCCCGCTCTGGATGGCCCCCAACACCATCACCCTCATCGGC
CTCGCCATCAACCTGGTCACCACACTAGTGCTCATCTTCTACTGCCCTACAGTCACGGAGGAGGCACCAT
ACTGGACATACCTTTTATGTGCCCTGGGACTCTTTATCTACCAGTCACTGGATGCCATTGATGGGAAACA
AGCCAGAAGGACAAACTCTTGCTCTCCCTTAGGGGAACTATTTGATCATGGTTGTGACTCTCTTTCCACA
GTATTTATGGCCATCGGCGCTTCCATTGCTGTTCGCCTAGGAACACATCCTGACTGGTTGTTTTTCTGCT
CTTTCGTTGGGATGTTCATGTTTTACTGTGCTCATTGGCAGACTTACGTCTCAGGAGTGTTAAGATTTGG
AAGGGTGGATGTCACTGAGATCCAGGTAGCTTTAGTGATCGTCTTCATGTTGTCAACATTTGGAGGAGCA
ACAATGTGGGACTATACGATACCTATTCTAGAAATAAAACTGAAGATTGTTCCGGTTCTTGGAGTTGTAG
GTGGATTAATATTTTCCTGTTCAAATTATTTCCATGTGATCCTCCATGGTGGTGTTGGCAAGAATGGGTC
TACTATTGCAGGCACCAGTGTCTTGTCACCTGGACTCCACATAGGATTAATTATTATATTGGCAATAATG
ATCTATAAGAAGTCTGCAACAAATATGTTTGAAAAACATCCTTGCCTTTATACTTTAATGTTTGGATGTG
TCTTTGCTAAAGTTGCACAAAAATTGGTGATAGCTCACATGACGAAAAGTGAACTATATCTTCAAGACAC
TGTCTTTATTGGGCCAGGTCTTTTATTTTTAGACCAATACTTTAATAATTTTATAGATGAATATGTTGTT
CTGTGGATAGCAATGGTCATTTCTTCATTTGATATGATGATATACTTTACTTCTTTGTGCCTGCAAATTT
CAAGACACCTTCATCTAAACATCTTCAAGACTTCATGTCAACAAGCACCGGAACAGGTTCAAGTTCTTTC
TTCAAAGACTCATCAGAATAACATGGATTGA

Translation (406 aa):
MAAGAGARPAPRWVKALGEPLSAAQLRRLEEHRYTAVGESLFEPPLQLYWTWLLQWIPLWMAPNTITLIG
LAINLVTTLVLIFYCPTVTEEAPYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLST
VFMAIGASIAVRLGTHPDWLFFCSFVGMFMFYCAHWQTYVSGVLRFGRVDVTEIQVALVIVFMLSTFGGA
TMWDYTIPILEIKLKIVPVLGVVGGLIFSCSNYFHVILHGGVGKNGSTIAGTSVLSPGLHIGLIIILAIM
IYKKSATNMFEKHPCLYTLMFGCVFAKVAQKLVIAHMTKSELYLQDTVFIGPGLLFLDQYFNNFIDEYVV
LWIAMVISSFDMMIYFTSLCLQISRHLHLNIFKTSCQQAPEQVQVLSSKTHQNNMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH