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Report for CCDS48571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48571.1 Public Mus musculus 10 Slc29a3 23 108 98 CCDS HistoryNCBI Gene:71279Re-query CCDS DB by CCDS ID:48571.1Re-query CCDS DB by GeneID:71279See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117513.7 ENSMUSP00000112685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117513.7Link to Ensembl Protein Viewer:ENSMUSP00000112685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117513Re-query CCDS DB by Protein ID:ENSMUSP00000112685
Original member Current member NCBI NM_023596.3 NP_076085.1 Accepted alive Link to Nucleotide Sequence:NM_023596.3Link to Protein Sequence:NP_076085.1Re-query CCDS DB by Nucleotide ID:NM_023596Re-query CCDS DB by Protein ID:NP_076085Link to BLAST:NP_076085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076085.1 475 Q99P65 475 100% 0 0

Chromosomal Locations for CCDS 48571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 60715836 60716490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60720861 60721023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60723764 60723990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60730570 60730652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60750386 60750684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60752734 60752734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCCTTTGCCTCTGAGGACAATGTATACCACAGCTCCAATGCTGTCTACAGAGCCCCGAGTAACCATC
AAGAAGCTGACCAGGAAGCCCTGCTGGGGAAACTACTAGACTACCCAGCCCCGGGCCTGCAGAGGCCAGA
GGATCGCTTCAATGGTGCCTACATCATCTTCTTCTGCCTGGGAATTGGGGGCCTACTGCCCTGGAACTTC
TTTGTCACTGCTAAGGAGTACTGGGCATATAAACTCCGAAACTGCTCCAGCCCAGCGTCCGGGGAGGACC
CTGAGGACATGGACATCCTGAACTACTTTGAGAGCTACCTGGCAGTTGCCTCCACTGTGCCCTCCCTGCT
GTTCCTGGTGGCTAACTTCCTGCTTGTCAACAGGGTCCAGGTGCACGTCCGTGTTCTGGCCTCACTGTCC
GTGTCCCTGGCCATCTTCGTGGTTATGATTGTGCTGGTGAAGGTGGATACTTCCTCCTGGACCCGAGGCT
TCTTCAGCCTCACCATCGCGTGCATGGCCATCATTAGCAGCTCCTCCACCATCTTCAATAGCAGCGTTTA
CGGCCTCACAGGCTCCTTCCCCATGAGGAATGCCCAGGCACTGATATCAGGAGGAGCCATGGGAGGGACA
GTCAGTGCCGTGGCCTTGCTGGTGGACCTGGCAGCATCCAGTGATGTGCGGGACAGCACGCTAGCCTTCT
TCCTCATGGCAGCAGTCTTCCTTGGGCTCTGTATGGGACTCTATCTATTGCTGTCCCAACTGGAGTATGC
CAGGTACTACATGAGGCCAGTTGCCCCAGTTCGAGTGTTTTCTGGTGAAGACAACCCATCCCAGGATGCT
CCCAGCGCCTCCTCTGTGGCCCCTGCATCCAGAGTGATGCACACACCGCCCCTTGGACCCATCCTGAAGA
AGACGGCTAGCCTCGGGTTCTGCGCAGTTTCCCTCTACTTTGTCACGGCCTTCATCATCCCCGCCATCTC
CACCAATATCCAGTCCATGCACAAAGGCACCGGCTCTCCATGGACCTCCAAGTTCTTCGTGCCCCTCACC
GTCTTCCTCCTCTTCAACTTTGCTGACCTCTGCGGCCGACAGGTCACAGCCTGGATCCAGGTGCCAGGTC
CTAGGAGCAAGCTGCTCCCCGGACTGGTGGTCTCTCGGTTCTGCCTTGTGCCTCTCTTCTTGCTCTGTAA
CTACCAGCCGCGCTCACACTTGACCAAGGTGCTTTTCCAGTCGGACATCTACCCAGTGCTTTTCACCTGC
CTCCTGGGGCTCAGCAACGGCTACCTCAGCACGCTGGTGCTCATCTATGGGCCCAAGATTGTGCCCCGGG
AGCTGGCTGAGGCCACCAGTGTTGTGATGTTGTTCTATATGTCTGTGGGCTTGATGCTGGGCTCAGCCTG
CGCGGCCCTGCTTGAACACTTTATCTAG

Translation (475 aa):
MAFASEDNVYHSSNAVYRAPSNHQEADQEALLGKLLDYPAPGLQRPEDRFNGAYIIFFCLGIGGLLPWNF
FVTAKEYWAYKLRNCSSPASGEDPEDMDILNYFESYLAVASTVPSLLFLVANFLLVNRVQVHVRVLASLS
VSLAIFVVMIVLVKVDTSSWTRGFFSLTIACMAIISSSSTIFNSSVYGLTGSFPMRNAQALISGGAMGGT
VSAVALLVDLAASSDVRDSTLAFFLMAAVFLGLCMGLYLLLSQLEYARYYMRPVAPVRVFSGEDNPSQDA
PSASSVAPASRVMHTPPLGPILKKTASLGFCAVSLYFVTAFIIPAISTNIQSMHKGTGSPWTSKFFVPLT
VFLLFNFADLCGRQVTAWIQVPGPRSKLLPGLVVSRFCLVPLFLLCNYQPRSHLTKVLFQSDIYPVLFTC
LLGLSNGYLSTLVLIYGPKIVPRELAEATSVVMLFYMSVGLMLGSACAALLEHFI


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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