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Report for CCDS48489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48489.1 Public Mus musculus 1 Syt14 23 108 98 CCDS HistoryNCBI Gene:329324Re-query CCDS DB by CCDS ID:48489.1Re-query CCDS DB by GeneID:329324See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000195354.5 ENSMUSP00000142190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195354.5Link to Ensembl Protein Viewer:ENSMUSP00000142190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195354Re-query CCDS DB by Protein ID:ENSMUSP00000142190
Original member Current member NCBI NM_181546.3 NP_853524.1 Accepted alive Link to Nucleotide Sequence:NM_181546.3Link to Protein Sequence:NP_853524.1Re-query CCDS DB by Nucleotide ID:NM_181546Re-query CCDS DB by Protein ID:NP_853524Link to BLAST:NP_853524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853524.1 555 Q7TN84 555 100% 0 0

Chromosomal Locations for CCDS 48489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192897307 192897620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192901752 192901941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192930478 192930927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192933114 192933385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192980346 192980561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192986718 192986882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193026970 193027017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193035623 193035635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGATCGAAGGTGGAGAGAGAACCTGTGGAGTACATGAACTTATCTGTATTAGAAAAGTCTCTCCAG
AGGCGGTTGGATTTTTGTCAGCAGTTGGGGTGTTTATTGTCTTGATGCTGCTCCTTTTTCTCTATATTAA
TAAGAAGTTCTGTTTTGAAAATGTTGGAGGGTTTCCAGATCTTGGTTCAGGATACAATACACGGACGAAT
TCACAAGATAAAATGTATAATTCTTACATGGACAGAGATGAGCCTGGTTCATCCTCTGAAAGTGAAGATG
AAGCACTGGGTAAATATCACGAGGCCTTATCCAGAACACACAATTCCAGATGGCCATTGGTAGATTCTAG
ACAAAAGAGCTATGCCTGGGAAACAAGGCAGAAGTACAGCCCCCTGTCTGCAGAGTACGACGGGTACAGC
ACTGAGGCATCCATGGAGGACGGAAACTGCATTCAGAGAATGAGGAGGACACCTCCGCTGGATGAGCTGC
AGCCGCCGCCTTACCAAGACGACAGCGGTTCTCCTCACCTCTCATGCACACCTTCCGAAATTGGGGATGC
CAAGTGTGAGATTTCCCACTGCAGCAATAGCCCAAGGTGTTCTTTCAACAAGTGCCCCAGTGAAGGAAGC
ACGGGTCACGAGGCCGAGAGCTATCACAATAAAGGATATGAAGATGATGTACCTAGCGACAGCACAGCAG
TCCTTAGCCCTGAAGACATGTCAGCTCAAGGATCCTCCTCACAGCTTCCTAAACCTTTTGATCCAGAGCC
AGAAGCTAAATATGGCACATTGGATGTGACTTTCGACTATGACTCTGAAAGACAGAAGCTCCTGGTAACG
GTGACAGCTGTCACAGACATTCCAACATATAACAGGACAGGTGGCAACTCGTGGCAGGTACACCTTGTTC
TTCTACCTATAAAAAAACAGAGAGCCAAAACCAGCATCCAGAGAGGACCATGCCCTGTCTTCACAGAAAC
ATTCAAATTTAACCACGTTGAATCCGAGATGATTGGAAACTATGCAGTTAGGTTTAGACTATATGGTGTC
CATCGCATGAAGAAAGAAAAGATTGTGGGGGAAAAGATTTTTTATTTAACAAAGTTGAATCTTCAAGGGA
AAATGTCGTTACCGGTGATACTGGAACCTTCATACAATCCTTCTGGCTGTGACTCTCAGGTGAGCTTGTC
TGAGGCATCCTGTGGTGACAGTACATCCTCCTGTCAGTCTCTTCAACATGGCTCTGTTCCAGAAATCCTC
ATTGGGCTCCTTTACAATGCCACCACTGGAAGACTATCAGCAGAAGTGATCAAAGGCAGCCACTTCAAAA
ACCTGGCAGCAAACAGACCACCCAATACATATGTTAAGTTAACACTGCTGAATTCCATGGGCCAAGAGAT
GTCCAAATGCAAGACATCCACCCGCAGAGGGCAGCCAAATCCGGTGTACAAGGAAACTTTTGTTTTTCAA
GTGGCCTTGTTTCAGCTTTCTGACGTGACTCTGATACTGTCTGTGTATAACAGGCGGAGCATGAAAAGGA
AGGAGATGATAGGCTGGATTTCCTTAGGTCTAAACAGCTCTGGGGAGGAGGAGCTCAGACACTGGACTGC
AATGAAGGAGTCGAAGGGACAGCAAGTGTGCAGGTGGCACGCACTGCTGGAGTCCTGA

Translation (555 aa):
MAIEGGERTCGVHELICIRKVSPEAVGFLSAVGVFIVLMLLLFLYINKKFCFENVGGFPDLGSGYNTRTN
SQDKMYNSYMDRDEPGSSSESEDEALGKYHEALSRTHNSRWPLVDSRQKSYAWETRQKYSPLSAEYDGYS
TEASMEDGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDAKCEISHCSNSPRCSFNKCPSEGS
TGHEAESYHNKGYEDDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSERQKLLVT
VTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGV
HRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNPSGCDSQVSLSEASCGDSTSSCQSLQHGSVPEIL
IGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSTRRGQPNPVYKETFVFQ
VALFQLSDVTLILSVYNRRSMKRKEMIGWISLGLNSSGEEELRHWTAMKESKGQQVCRWHALLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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