NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48438.1 Public Mus musculus 1 Nos1ap 23 108 98 CCDS HistoryNCBI Gene:70729Re-query CCDS DB by CCDS ID:48438.1Re-query CCDS DB by GeneID:70729See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160456.7 ENSMUSP00000125251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160456.7Link to Ensembl Protein Viewer:ENSMUSP00000125251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160456Re-query CCDS DB by Protein ID:ENSMUSP00000125251
Original member NCBI NM_001109985.2 NP_001103455.1 Updated not alive Link to Nucleotide Sequence:NM_001109985.2Link to Protein Sequence:NP_001103455.1Re-query CCDS DB by Nucleotide ID:NM_001109985Re-query CCDS DB by Protein ID:NP_001103455
Current member NCBI NM_001109985.3 NP_001103455.1 Accepted alive Link to Nucleotide Sequence:NM_001109985.3Link to Protein Sequence:NP_001103455.1Re-query CCDS DB by Nucleotide ID:NM_001109985Re-query CCDS DB by Protein ID:NP_001103455Link to BLAST:NP_001103455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103455.1 503 Q9D3A8-1 503 100% 0 0

Chromosomal Locations for CCDS 48438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170318472 170318890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170320422 170320587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170327518 170327697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170329141 170329307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170338113 170338254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170349395 170349503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170375248 170375306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170390731 170390823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170514615 170514686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170589260 170589364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGCCCAGCAAAACCAAGTACAACCTTGTGGACGATGGGCACGATCTACGGATCCCTTTGCACAACGAGG
ACGCCTTCCAGCACGGCATCTCTTTTGAGGCCAAGTACGTGGGAAGCCTGGATGTGCCCAGACCCAACAG
CAGGGTTGAGATCGTGGCTGCCATGCGCAGAATCCGGTATGAGTTTAAAGCCAAGAACATCAAGAAGAAG
AAAGTAAGCATCATGGTCTCTGTGGACGGTGTCAAGGTGATTCTGAAGAAGAAGAAAAAGAAAAAGGAGT
GGACGTGGGATGAGAGCAAGATGCTGGTGATGCAGGACCCTATCTACAGGATCTTCTATGTCTCTCATGA
CTCCCAAGACTTGAAAATCTTCAGCTATATTGCCAGAGATGGTGCCAGCAATATCTTCAGATGTAACGTC
TTTAAATCCAAAAAGAAGAGTCAAGCTATGAGAATCGTGCGGACAGTGGGACAGGCCTTCGAAGTCTGCC
ACAAGCTGAGCCTGCAGCACACACAGCAGAATGCAGATGGCCAGGAAGATGGGGAGAGCGAGAGGAACAG
TGATGGCTCAGGAGACCCAGGCCGGCAGCTCACGGGAGCTGAGAGGGTCTCCACAGCCGCTGCAGAGGAG
ACAGACATTGACGCCGTGGAGGTCCCACTCCCTGGGAATGACATTCTGGAATTCAGCCGAGGTGTGACTG
ATCTGGATGCCGTAGGGAAGGATGGAGGCTCCCACATAGACTCAACGGTCTCACCCCACCCTCAGGAGCC
CATGCTGACAGCCTCCCCTCGAATGCTGCTCCCTTCCTCTTCCTCGAAGCCGCCAGGCTTGGGCACGGGG
ACGCCCCTGTCCACTCACCACCAGATGCAGCTCCTCCAGCAGCTCCTCCAGCAGCAGCAACAACAGACAC
AAGTGGCTGTGGCCCAGGTACACTTACTGAAGGATCAGTTGGCTGCTGAGGCTGCGGCGCGGCTGGAGGC
CCAGGCACGAGTGCACCAGCTCCTGCTGCAGAACAAAGACATGCTCCAGCACATCTCTCTGCTGGTCAAG
CAGGTGCAGGAGCTGGAGCTGAAGCTGTCAGGACAGAACACCATGGGCTCCCAGGACAGCTTGCTGGAGA
TCACCTTCCGTTCAGGTGCCCTGCCTGTGCTCTGTGAATCCACCACCCCTAAGCCAGAGGACCTACACTC
ACCACTGCTGGGCGCTGGCTTGGCTGACTTTGCCCACCCAGCGGGCAGCCCTTTAGGTAGGCATGACTGC
TTGGTGAAGCTGGAGTGCTTTCGCTTCCTCCCACCTGAGGATACCCAGCCGATGATGGCACAGGGTGAGC
CGCTCCTAGGTGGCCTGGAGCTCATCAAGTTCCGAGAGTCGGGCATCGCCTCTGAGTATGAGTCCAACAC
AGACGAAAGCGAGGAGCGTGACTCATGGTCACAGGAAGAGCTGCCACGCCTGCTCAATGTCTTACAGCGG
CAGGAGTTGGGTGACAGTTTGGATGATGAGATCGCCGTGTAG

Translation (503 aa):
MPSKTKYNLVDDGHDLRIPLHNEDAFQHGISFEAKYVGSLDVPRPNSRVEIVAAMRRIRYEFKAKNIKKK
KVSIMVSVDGVKVILKKKKKKKEWTWDESKMLVMQDPIYRIFYVSHDSQDLKIFSYIARDGASNIFRCNV
FKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQEDGESERNSDGSGDPGRQLTGAERVSTAAAEE
TDIDAVEVPLPGNDILEFSRGVTDLDAVGKDGGSHIDSTVSPHPQEPMLTASPRMLLPSSSSKPPGLGTG
TPLSTHHQMQLLQQLLQQQQQQTQVAVAQVHLLKDQLAAEAAARLEAQARVHQLLLQNKDMLQHISLLVK
QVQELELKLSGQNTMGSQDSLLEITFRSGALPVLCESTTPKPEDLHSPLLGAGLADFAHPAGSPLGRHDC
LVKLECFRFLPPEDTQPMMAQGEPLLGGLELIKFRESGIASEYESNTDESEERDSWSQEELPRLLNVLQR
QELGDSLDDEIAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH