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Report for CCDS48434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48434.1 Public Mus musculus 1 Gm4847 23 108 98 CCDS HistoryNCBI Gene:226604Re-query CCDS DB by CCDS ID:48434.1Re-query CCDS DB by GeneID:226604See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046662.7 ENSMUSP00000039839.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046662.7Link to Ensembl Protein Viewer:ENSMUSP00000039839.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046662Re-query CCDS DB by Protein ID:ENSMUSP00000039839
Original member Current member NCBI NM_001164312.1 NP_001157784.1 Accepted alive Link to Nucleotide Sequence:NM_001164312.1Link to Protein Sequence:NP_001157784.1Re-query CCDS DB by Nucleotide ID:NM_001164312Re-query CCDS DB by Protein ID:NP_001157784Link to BLAST:NP_001157784.1

Chromosomal Locations for CCDS 48434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166630169 166630526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166632660 166632735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166634740 166635089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166638189 166638388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166639996 166640138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166641607 166641769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166642179 166642367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166643345 166643479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGGGGTAAAAAGAATTGCAGTGATTGGTGCGGGGGTCAGCGGACTAGGTGCCATTAAGTGCTGTTTGG
AGGAGGGACTAGAACCTACCTGTTTTGAAAAGAAGAGTGACATCGGAGGACTGTGGAAATATGAGGAGAT
ACCAAAAAGTGGAAATCTTGGGATATACAAATCTTTAACCTGCAATACCTCCAAGGAGATGACAGCCTTC
AGCGACTACCCCATCCCTGATCATTACCCCAACTACATGCACCACTCCAAAATGATGGAGTACCTCAGGA
TGTATGCCAGGCACTTCGGGCTCATGAAACACATCCAGTTCCAGACAAACGTGTGCAATATAAAGAAGCG
CCCTGACTTTTCATCCTCTGGTCAATGGGATGTGGTAGTAGAGACCGAGGAGATGCAGAAAACCTACATA
TTTGATGGGATAATGGTTTGCAGTGGTCACTACACTGAGAAGTACTTTCCTTTACAAGACTTTGAAGGAA
TCAGCAAGTTCCAAGGCAGCTATCTCCACACCTGGGAGTACAAACACCCCGACAACTTTGTGGGGAAGAG
AGTGGCAGTGATTGGCCTTGGGAATTCTGGAGCAGATGTGGCAGGCGAGATCAGCAGGGTCGCTGACCAG
GTTTTCCTCAGCACAAGACAAGGGGCATGGATATGGAATCGAGTTTGGGACCATGGGGAGCCCATGGACA
CCACAGTCTTCACTCGTTATAATAGAGCTGTACAAAAGATCTGCCCCAGATACATAATCAACAGACAGAT
GGAGAAGAAGTTAAATGGAAGGTTTAATCATGCCAATTACGGGCTGCTGCCTACACACAGAATTCTTGAA
CAGCGAACAGTTTTGAGTGATGACCTGCCAAATCGCATCATTATTGGAAAAGTGAAGATAAAACCAAATG
TTAAAGAGTTCACCTCAACATCGGCCATCTTTGAGGATGGAACCAAGGAGAACATAGACGTTGTCATCTT
TGCCACAGGCTATAAACTGTCATTCCCTTTCTTGAGTGATGACTCAGGAGTCCTAGACAACCAGTACTCC
ATGTTTAAATATGTCTTCCCTCCTGAGCTAGAGAAGCCAACTCTGGCTTTCATTGGCATCCTCCAGCCAG
CTGGAGCCATCCTCCCCACAAGTGAGCTCCAGAGCCGATGGGTTGTGCATGTGTTCAAAGGAATAAAAAA
GTTGCCCTCAAGGAGAGCCATGATAGCCGACATCAACAGAAAGAATCATCAAATAATGGCCAAAGGCTCT
AAGAAAATTCTCCAAGACCATCGCCGAGTAACATTCGTCGACTACATGGACGAAATTGCTTCTGAGATAG
GTGTCAAACCCAACCTGCTCTCTCTCCTCCTCTGGGATACAAAACTGGCTAAGGAAGTGTTCTGTGGTCC
TTGCACTTCCTACCAGTACCGTCTACAGGGCCCAGGGAAATGGGATGGGGCTCGGGCAGCCATCCTCACT
CAGAGAGAAAGGATGCTCAAACCCCTGAGAACCCGTGTGGTCAAACAATCTCACCTCTCTCATCTGTCCT
GGGTCAAAAGTGCTTGTGTTGTCGTTTTTTTCTTTATTTCCGTAGTAGTTATCATGCATATCACAAGTCA
CTAA

Translation (537 aa):
MGVKRIAVIGAGVSGLGAIKCCLEEGLEPTCFEKKSDIGGLWKYEEIPKSGNLGIYKSLTCNTSKEMTAF
SDYPIPDHYPNYMHHSKMMEYLRMYARHFGLMKHIQFQTNVCNIKKRPDFSSSGQWDVVVETEEMQKTYI
FDGIMVCSGHYTEKYFPLQDFEGISKFQGSYLHTWEYKHPDNFVGKRVAVIGLGNSGADVAGEISRVADQ
VFLSTRQGAWIWNRVWDHGEPMDTTVFTRYNRAVQKICPRYIINRQMEKKLNGRFNHANYGLLPTHRILE
QRTVLSDDLPNRIIIGKVKIKPNVKEFTSTSAIFEDGTKENIDVVIFATGYKLSFPFLSDDSGVLDNQYS
MFKYVFPPELEKPTLAFIGILQPAGAILPTSELQSRWVVHVFKGIKKLPSRRAMIADINRKNHQIMAKGS
KKILQDHRRVTFVDYMDEIASEIGVKPNLLSLLLWDTKLAKEVFCGPCTSYQYRLQGPGKWDGARAAILT
QRERMLKPLRTRVVKQSHLSHLSWVKSACVVVFFFISVVVIMHITSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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