NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48433.1 Public Mus musculus 1 Gm4846 23 108 98 CCDS HistoryNCBI Gene:226601Re-query CCDS DB by CCDS ID:48433.1Re-query CCDS DB by GeneID:226601See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48433.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143922.1 ENSMUSP00000123476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143922.1Link to Ensembl Protein Viewer:ENSMUSP00000123476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143922Re-query CCDS DB by Protein ID:ENSMUSP00000123476
Original member Current member NCBI NM_001164306.1 NP_001157778.1 Accepted alive Link to Nucleotide Sequence:NM_001164306.1Link to Protein Sequence:NP_001157778.1Re-query CCDS DB by Nucleotide ID:NM_001164306Re-query CCDS DB by Protein ID:NP_001157778Link to BLAST:NP_001157778.1

Chromosomal Locations for CCDS 48433.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166483672 166484035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166485633 166485705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166486893 166487242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166490016 166490215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166491538 166491680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166494510 166494672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166495829 166496017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166497386 166497520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGAAGTAAAACAGATTGCAATCATTGGTGCTGGTGTCAGTGGACTGGGAGCCATTAAGAGCTGCTTGG
AGGAAGGACTTGAACCTACTTGCTTTGAAAAGAGCAATGACATTGGAGGTCTGTGGAGATACAAGGAGAC
ACCAGAAAACGGAAGGCCTGGAATATACAAATCTTTAACCTGCAATACATCCAAGGAGATGACAACCTTC
AGCGACTACCCCATCCCTGATCATTACCCCAACTACATGCACCACTCCAAAATGATGGAGTATCTCAGGA
TGTATGCCAGGCACTTCGGGCTCATGAAACACATCCAGTTCCAGACAAGAGTGTGTGTGGTGCGGAAGCG
CCCTGATTTTTCATCCTCAGGCCAGTGGGACGTTGTGGTGGAGGCTGACGGGAAGCAGAAAAATTATATC
TTCGATGGGGTCATGGTTTGCAGTGGTCACTACACTGAGAAGTATCTGCCCTTGCAGGATTTTGCAGGAA
TCAGCAAGTTCCAAGGCAGCTGTCTCCACAGCTGGGAGTACAAGCACCCAGACAGTTTTGTGGGGAAGAG
AGTTGTCGTGATTGGCATTGGGAATTCTGGAGCAGATGTGGCAAATGAGATCAGCTGTGTCACTGAACAG
GTTTTCCTCAGCACAAGACGAGGGACGTGGATATGGAACCGAGTTTGGGATAATGGGGATCCCTTGGACA
TCGCACTCTTCACCCGTTATAACAGAACCGTCAAAAGTTTCTATCCTACGTTCCTAATCAACAGATGGAC
AGAGAATAAATTAAATTTGAGGTTTAACCATGCCAATTATGGACTGCAGGCTAAGCACAGATTTCTCAGC
CATCAGTCTATCTTCAGTGATGACCTGCCAAATCGCATCATTTCCGGAAGAGTGCTGGTGAAGACCAACG
TGAGGGAGTTCACCTCCACGTCCGCCATCTTTGAGGATGGCTCGGAGGAGATTGTAGACGTTGTTGTCTT
TGCCACAGGCTACACTTTATCTTTCCCTTTCTTGGATGACAGCTCTGAAATCCTGGACAGCAAACACACA
ATGTTTAAGTTTGTCTTCCCTCCTCAGTTAGAGAAGCCAACACTAGCCTTCATTGGGATCCTCCAGCCAA
TAGGAGCCACAATTCCCACATCAGAGCTCCAAAGCCGATGGGTTACACGCGTGTTCGCAGGATTGCAAAA
GTTACCCTCACAAAGCAACATGATGGCAGACATCAATAGAAAGAAACGGAAGATGGAGAAAGAGTTTGTG
AAAAGCCCCAGAGATGTACGTCGAGTGCCGTATATCGACTACATGGATGAAATTGCTTCTGAGATAGGTG
TCAAACCCAACCTGCTCTCTTTCTTCCTCTGGGATACAAAGTTAGCCAAGGAGATTTTCTGGGGACCCTG
TACCCCATACCAGTATCGTCTACAAGGGCCAGGGAAATGGGCAGGTGCTCGGGCAGCCATCCTCACTCAG
AGAGACCGGATCCTCAAACCCCTGAGATCCCGGGTGCTCAAAAACTCTGAGACATCGTCCTCTAGTCTAT
TCTGGGTCAGATGTATCTGTGCTGTCATTTTTCCCTTTGTTTCTGTGTTTGCTATCATCCATGCCATATA
TCAGTGA

Translation (538 aa):
MEVKQIAIIGAGVSGLGAIKSCLEEGLEPTCFEKSNDIGGLWRYKETPENGRPGIYKSLTCNTSKEMTTF
SDYPIPDHYPNYMHHSKMMEYLRMYARHFGLMKHIQFQTRVCVVRKRPDFSSSGQWDVVVEADGKQKNYI
FDGVMVCSGHYTEKYLPLQDFAGISKFQGSCLHSWEYKHPDSFVGKRVVVIGIGNSGADVANEISCVTEQ
VFLSTRRGTWIWNRVWDNGDPLDIALFTRYNRTVKSFYPTFLINRWTENKLNLRFNHANYGLQAKHRFLS
HQSIFSDDLPNRIISGRVLVKTNVREFTSTSAIFEDGSEEIVDVVVFATGYTLSFPFLDDSSEILDSKHT
MFKFVFPPQLEKPTLAFIGILQPIGATIPTSELQSRWVTRVFAGLQKLPSQSNMMADINRKKRKMEKEFV
KSPRDVRRVPYIDYMDEIASEIGVKPNLLSFFLWDTKLAKEIFWGPCTPYQYRLQGPGKWAGARAAILTQ
RDRILKPLRSRVLKNSETSSSSLFWVRCICAVIFPFVSVFAIIHAIYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH